f2197fba1e4de84ba27c7aa43c4966a3 *CITATION
b527f20a35a95b8039365b40dbf75f05 *DESCRIPTION
06e33caa0827cb8be3b19dde72f3b115 *INDEX
31e206599a99e1ade47481559f87451b *Meta/Rd.rds
6aeacd7a94fb44a59f79086cfb16b70d *Meta/data.rds
fb7fdc49e6f7592b59f7a8109e5c0689 *Meta/features.rds
c7bd3205bd57e8af8f5582a26a6eb130 *Meta/hsearch.rds
5a00f14f581a8035614593f0244c8a67 *Meta/links.rds
ff2a6f4e11a033de8783b9dfe6692751 *Meta/nsInfo.rds
1d670c22dbe84bc3f38ed256013d6edf *Meta/package.rds
3c38e08c489d8d1060199b187ba770c3 *Meta/vignette.rds
3c58e51ed31e3e39e329547d0de938fe *NAMESPACE
44ae129a9f93f36c44c550c510554cd2 *NEWS.Rd
d6c68f1fe41ced6e98a766a3757313da *R/scPipe
2ca931ee78cc7fda93e088e771d3c874 *R/scPipe.rdb
4021509275a4e8b84afa48bf7a027a1c *R/scPipe.rdx
1dc17379efee0dc44aee270095903ff5 *data/sc_sample_data.RData
2594a9728f0d35790ec31657b0f9c880 *data/sc_sample_qc.RData
86c18c85d578c707d79b2c8283737b6f *doc/index.html
84352518295714a7df14e8c578552fb4 *doc/scPipe_tutorial.R
32774cd76c26cd7e96192c28b9e647af *doc/scPipe_tutorial.Rmd
e4ad79ecd1503cbc3dad319e95b05776 *doc/scPipe_tutorial.html
339e0225f3294bf2bf89ac33d71a73c2 *extdata/ERCC92.fa
6e4cb84dc35b55f6c26e244c3d518583 *extdata/ERCC92_anno.gff3
e6007becb38885068ee4c1569f11676c *extdata/barcode_anno.csv
8577e8f76719bf43c33a7f7db593ef83 *extdata/ens_tiny_anno.gff3.gz
95dcee5780eae0513826393d7731faf6 *extdata/ens_tiny_anno.gtf.gz
4b69e9071aaebe7e0f0b72faba999836 *extdata/ensembl_hg38_chrY.gtf.gz
2775eff980dad9481fe7170ef11b3b29 *extdata/ensembl_y_tiny.gtf.gz
1ec5e129ea424597706f4b625327c69b *extdata/gen_tiny_anno.gff3.gz
84f6ae29496eb56652f373b91bfef183 *extdata/gen_tiny_anno.gtf.gz
220922b0d0b25aa599770ca139e2d2e1 *extdata/ref_tiny_anno.gff3.gz
9dfbef8618c8f28177f261016c18730d *extdata/report_template.Rmd
60ecd0d30f4bb5aee8a052a6051d2e1c *extdata/report_template_slim.Rmd
4f72dbb833c45e8d9417b4bc3a0b4716 *extdata/simu_R1.fastq.gz
6b555e64cd9a0e3dbe416284e857fae2 *extdata/simu_R2.fastq.gz
ed4dd019106f776802703cc17ca2ba4d *help/AnIndex
f1bfea3e887729b8b6fc2169d50a9dc2 *help/QC_metrics+2CSingleCellExperiment-method.html
f1bfea3e887729b8b6fc2169d50a9dc2 *help/QC_metrics+3C-+2CSingleCellExperiment-method.html
f1bfea3e887729b8b6fc2169d50a9dc2 *help/QC_metrics+3C-.html
f1bfea3e887729b8b6fc2169d50a9dc2 *help/QC_metrics.html
f1bfea3e887729b8b6fc2169d50a9dc2 *help/QC_metrics.sce.html
4cb12ea11de1821571c8f27331275a1d *help/UMI_dup_info+2CSingleCellExperiment-method.html
4cb12ea11de1821571c8f27331275a1d *help/UMI_dup_info+3C-+2CSingleCellExperiment-method.html
4cb12ea11de1821571c8f27331275a1d *help/UMI_dup_info+3C-.html
4cb12ea11de1821571c8f27331275a1d *help/UMI_dup_info.html
4cb12ea11de1821571c8f27331275a1d *help/UMI_dup_info.sce.html
4648092c23512248a0e41dfd0cc56ae9 *help/UMI_duplication.html
d084a34c851fb4e48475d95f98685368 *help/aliases.rds
3bdca9bc2e2c46a984df58348b7a3ce3 *help/anno_import.html
a75f98c404181d4ef9c062b4ae308c47 *help/anno_to_saf.html
84d577bc458ed17d7bec9d95d7f81097 *help/calculate_QC_metrics.html
323981e2819120d1791119f0236c8ec7 *help/cell_barcode_matching.html
6fcec2ca6532f248732910cd755bc3ae *help/convert_geneid.html
e608ab6abc8606ccb4dc9443f518510e *help/create_processed_report.html
e586946870c919eb7d1c0f199004910c *help/create_report.html
e412bcfff8b5536a7a4ab4bc77a6dc7b *help/create_sce_by_dir.html
6ea02ba7b863a9af122e52429fa669cf *help/demultiplex_info+2CSingleCellExperiment-method.html
6ea02ba7b863a9af122e52429fa669cf *help/demultiplex_info+3C-+2CSingleCellExperiment-method.html
6ea02ba7b863a9af122e52429fa669cf *help/demultiplex_info+3C-.html
6ea02ba7b863a9af122e52429fa669cf *help/demultiplex_info.html
6ea02ba7b863a9af122e52429fa669cf *help/demultiplex_info.sce.html
d043009a68b959dc32a6a4ec27c77393 *help/detect_outlier.html
ff711641dbfc20850a42d2653c2cbe9e *help/gene_id_type+2CSingleCellExperiment-method.html
ff711641dbfc20850a42d2653c2cbe9e *help/gene_id_type+3C-+2CSingleCellExperiment-method.html
ff711641dbfc20850a42d2653c2cbe9e *help/gene_id_type+3C-.html
ff711641dbfc20850a42d2653c2cbe9e *help/gene_id_type.html
ff711641dbfc20850a42d2653c2cbe9e *help/gene_id_type.sce.html
67f0236639ba4aa6702abbafc4fb82d1 *help/get_ercc_anno.html
c1ec524762ae40c7a7d7268c01c165d9 *help/get_genes_by_GO.html
bf058aa2e478fe2db26053bcfac9e5db *help/get_read_str.html
aa495cc3bbd7da4b9c035be9724a8c74 *help/organism+2CSingleCellExperiment-method.html
aa495cc3bbd7da4b9c035be9724a8c74 *help/organism+3C-+2CSingleCellExperiment-method.html
aa495cc3bbd7da4b9c035be9724a8c74 *help/organism.html
aa495cc3bbd7da4b9c035be9724a8c74 *help/organism.sce.html
f1240acab274249bd5cd2544ff5867cb *help/paths.rds
630e4e70451bcb626378867c2330480e *help/plot_QC_pairs.html
129198cee9324123d636c9444254a35e *help/plot_UMI_dup.html
9baf46035a0fd3bb71c45318eb743523 *help/plot_demultiplex.html
aee8e51a8aa27314747d80945298afe1 *help/plot_mapping.html
bac5a8c2e368b9c2cc351da39a05ee47 *help/remove_outliers.html
6724013c30b1064a798075bad777137d *help/scPipe-package.html
6724013c30b1064a798075bad777137d *help/scPipe.html
52a9b95bf77eb1b97da6c6cd4f54be2a *help/scPipe.rdb
06e9015cfb5770686e7fc63947698158 *help/scPipe.rdx
f0a45b49a8e252838f7dd47c3f99359e *help/sc_correct_bam_bc.html
32ce8b2e2a15d2f206387bded21f1ad5 *help/sc_count_aligned_bam.html
0eddcdd491dad3a51c639830e753d385 *help/sc_demultiplex.html
651e5d3249b8c0efe90fd0d5f38cfb16 *help/sc_demultiplex_and_count.html
1e70ce500187ff53355f64a89d299fec *help/sc_detect_bc.html
0f6064ab5ead1f724f5b6d2e3f307ba5 *help/sc_exon_mapping.html
8185f9cdd3b0a3b68194ec8c159852d6 *help/sc_gene_counting.html
c91f0062b8fe29d1ffecf4698ee97346 *help/sc_sample_data.html
968b2ac83e333fed7103f3ae2bb55cee *help/sc_sample_qc.html
275273b9a6e22b792bdc8a0a9ba5fe3b *help/sc_trim_barcode.html
f4da2aa2564b95d74cb3c80c51b1ea26 *html/00Index.html
7e8728dfe93c3e629a76a7f513be6e0c *html/QC_metrics.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
f8fb5010634a09e9b8bc4681e5b8a676 *html/UMI_dup_info.html
db7ad19a99719b3038afcb1d65837a56 *html/UMI_duplication.html
25baed8fafb4819e0690075f0a0482b6 *html/anno_import.html
b763729f34698bbf54214b8aae5be9d9 *html/anno_to_saf.html
565ddee05740148acabb2800c5c8e8d4 *html/calculate_QC_metrics.html
7aea18ba6122283cc06b51408ce7660c *html/cell_barcode_matching.html
d13f98ed49c8273ad8f955a9604b3ce2 *html/convert_geneid.html
c03082828eaa2280adcd730309c58426 *html/create_processed_report.html
7dadc8c3caf3a7313b613827f65db7a6 *html/create_report.html
894be9bc721bef4ddb2476cff87ff94e *html/create_sce_by_dir.html
371ac2c6cb592453177ef4d18d12ed0d *html/demultiplex_info.html
f26baeded18adf847a481a559ad67740 *html/detect_outlier.html
95fdaa93aeab8f8b32abab83d85011b9 *html/gene_id_type.html
cb37d0d94aa25c4b0c045afe1b7b7f5b *html/get_ercc_anno.html
d262961ddcaf02086279bbc2001a747a *html/get_genes_by_GO.html
a2cfd31a226c24f85d8f3063184bafe0 *html/get_read_str.html
bac22e624bc481b4993e744cf35364c8 *html/organism.html
1fccef991dc05f6e3c4edc7cb9db28f0 *html/plot_QC_pairs.html
8b507a59b63a67dfc6d963fc0662d2f4 *html/plot_UMI_dup.html
fa58a1b4bda731b79f7b6b8f61f6c324 *html/plot_demultiplex.html
d8f5c6d5b37b188b3e13095b6f401c95 *html/plot_mapping.html
23ae4ac9477ec4c3440f55ae9e813f96 *html/remove_outliers.html
733c52e98d84fbf49d5c64eeb3c78242 *html/scPipe.html
94c687911a4a015d58db56ea54c25ef2 *html/sc_correct_bam_bc.html
cbba133d8ac29d9ff0f446e004efaf65 *html/sc_count_aligned_bam.html
bce593dd2fb0b25c5f2b80ca6c3c5454 *html/sc_demultiplex.html
059150a42d9b0b6eedba860eb7165e18 *html/sc_demultiplex_and_count.html
feb4320254fca902806255fdead84d53 *html/sc_detect_bc.html
30873e5ddfcbb66b992945f168a3e7e1 *html/sc_exon_mapping.html
41264164db96d69146ab1f29dccef109 *html/sc_gene_counting.html
81b13b8cd32879f3a47e24aa7e7ac294 *html/sc_sample_data.html
e5701189559073bd8309dbb74a502616 *html/sc_sample_qc.html
71b74de50c3870b88f073f1d3f4a9c49 *html/sc_trim_barcode.html
ada481f33c4abe327c7b05026d99dbcd *libs/i386/scPipe.dll
6616176f1f470359ab990cb2ab39c367 *libs/x64/scPipe.dll
e17bcd270318aaaabf8568c328e3d59c *scPipe.png
a4e7b825ee1d624e008b5bcb4659e78d *workflow.png
