Pretrained learning models for cell type prediction on single cell RNA-sequencing data

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Documentation for package ‘scClassifR’ version 1.2.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

balance_dataset	Internal functions of scClassifR package
cell_type	cell_type
cell_type<-	Setter for cell_type Change cell type for a classifier
checkCellTypeValidity	Internal functions of scClassifR package
checkClassifierValidity	Internal functions of scClassifR package
checkFeaturesValidity	Internal functions of scClassifR package
checkObjectValidity	Internal functions of scClassifR package
checkParentValidity	Internal functions of scClassifR package
checkPThresValidity	Internal functions of scClassifR package
check_parent_child_coherence	Internal functions of scClassifR package
check_parent_child_coherence-method	Internal functions of scClassifR package
classify_cells	Classify cells from multiple models
classify_cells-method	Classify cells from multiple models
classify_clust	Internal functions of scClassifR package
clf	clf
clf<-	Internal functions of scClassifR package
construct_tag_vect	Internal functions of scClassifR package
construct_tag_vect-method	Internal functions of scClassifR package
default_models	Pretrained classifiers for human cells
delete_model	Delete model/branch from package
features	features
features<-	Internal functions of scClassifR package
filter_cells	Internal functions of scClassifR package
filter_cells-method	Internal functions of scClassifR package
load_models	Internal functions of scClassifR package
make_prediction	Internal functions of scClassifR package
parent	parent
parent<-	Internal functions of scClassifR package
plant_tree	Plant tree from list of models
plot_roc_curve	Plot roc curve
process_parent_clf	Internal functions of scClassifR package
process_parent_clf-method	Internal functions of scClassifR package
p_thres	p_thres
p_thres<-	Setter for predicting probability threshold
save_new_model	Save a model to the package
scClassifR	scClassifR class.
select_features	Internal functions of scClassifR package
show-method	Show object
simplify_prediction	Internal functions of scClassifR package
test_classifier	Testing process.
test_classifier-method	Testing process.
test_performance	Internal functions of scClassifR package
tirosh_mel80_example	A Seurat Object Sample
train_classifier	Train cell type classifier
train_classifier-method	Train cell type classifier
train_func	Internal functions of scClassifR package
transform_to_zscore	Internal functions of scClassifR package
verify_parent	Internal functions of scClassifR package