e81cc0b31c8268193b8ed25520cd3078 *CITATION
b127ef2b9ef8953216d34e9e48c3f931 *DESCRIPTION
88e316cb66f0d5715d3d7051e94e0547 *INDEX
d0efd59068a5d3aeba0a7aa127ed7dcc *LICENSE
f80b15997cc469f55101561aa647ca5d *Meta/Rd.rds
0ddb6701ed0a1fa689bfa139af35c374 *Meta/data.rds
8503e676975364d771072956cdbca633 *Meta/features.rds
a37b50ba7cb382e3f143e0897bc58161 *Meta/hsearch.rds
a2bed29f2238e2c92409495eb914dac3 *Meta/links.rds
fdc67df88b2d47da4c0e7e192c6fedea *Meta/nsInfo.rds
3bc431f9d4984540dfc8fa5d5fb7fe6b *Meta/package.rds
c5438828ba36ba1c204ec09b47397c84 *Meta/vignette.rds
1017b162e0a647e0737bfbcbc7789a8e *NAMESPACE
cb51d73dba319402257e54443bcb3485 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/sangeranalyseR
a5bd690c737faf82590f4e8ae7733492 *R/sangeranalyseR.rdb
8cb8d7be2bc45eebf34d3dd376091413 *R/sangeranalyseR.rdx
4678ba3aa3d724a3890d4bfdf66e430d *data/datalist
13c0e904ea1fb0b31da4012814cc75ae *data/qualityReportData.RData
dee8fa2b9b08a9c84960f2e4ee826a8a *data/sangerAlignmentData.RData
97832921f2a0071bc237c070f6ba8c62 *data/sangerContigData.RData
2ecb3d856d10ea5b2e677baf3786a78c *data/sangerReadFData.RData
06bdb80c3fc0824cdc8e23a50561f20d *doc/index.html
46ffbbac704fbf5d2bd5a3e188dd73c5 *doc/sangeranalyseR.R
42086b56b4d912396e1183eadb2e0036 *doc/sangeranalyseR.Rmd
e3b001be00fd7d16b0d887b29420fcf6 *doc/sangeranalyseR.html
ebd5e5a17a16d832321c19329b736e9d *extdata/Allolobophora_chlorotica/ACHLO/Achl_ACHLO006-09_1_F.ab1
67a3e0901f882cfa993aa2da8f61a272 *extdata/Allolobophora_chlorotica/ACHLO/Achl_ACHLO006-09_2_R.ab1
5d461865f6973fdd13b1ce7b74437ce9 *extdata/Allolobophora_chlorotica/ACHLO/Achl_ACHLO007-09_1_F.ab1
21b505c9e8636ee20b5194cf0b217397 *extdata/Allolobophora_chlorotica/ACHLO/Achl_ACHLO007-09_2_R.ab1
12e16ddbb236cc0fba3a23517dbd8429 *extdata/Allolobophora_chlorotica/ACHLO/Achl_ACHLO040-09_1_F.ab1
b99d8d1a30c15866ad7243d9ac979ad8 *extdata/Allolobophora_chlorotica/ACHLO/Achl_ACHLO040-09_2_R.ab1
bb3a97f462e54296ae38656d48db466f *extdata/Allolobophora_chlorotica/ACHLO/Achl_ACHLO041-09_1_F.ab1
cd9c1a64368de7a0724102cdc67b4426 *extdata/Allolobophora_chlorotica/ACHLO/Achl_ACHLO041-09_2_R.ab1
fc7f4c0005d11ffda1fdb160aa6fa4a0 *extdata/Allolobophora_chlorotica/RBNII/Achl_RBNII384-13_1_F.ab1
8981a30a23c20c184632d78aaab9238f *extdata/Allolobophora_chlorotica/RBNII/Achl_RBNII384-13_2_R.ab1
c793cd09666c47a0feeb64c024fd7669 *extdata/Allolobophora_chlorotica/RBNII/Achl_RBNII395-13_1_F.ab1
b5bbab2183c78a37ba9286055c853c0d *extdata/Allolobophora_chlorotica/RBNII/Achl_RBNII395-13_2_R.ab1
69ec3adcfd8e3b849b7ae4219b5d1f7f *extdata/Allolobophora_chlorotica/RBNII/Achl_RBNII396-13_1_F.ab1
73007d0441e71dc8876a86d25a0864b7 *extdata/Allolobophora_chlorotica/RBNII/Achl_RBNII396-13_2_R.ab1
810592c54de10a25098c41527caf624a *extdata/Allolobophora_chlorotica/RBNII/Achl_RBNII397-13_1_F.ab1
b8eb5f0fb0a6e8911f7975e99469dbcf *extdata/Allolobophora_chlorotica/RBNII/Achl_RBNII397-13_2_R.ab1
31d2639118e0e88ce12d3376b7bccf12 *extdata/Drosophila_melanogaster/Dmel_BBDCN941-10_1_F.ab1
0ddafa308efd1c0f3978ac8dde9128dc *extdata/Drosophila_melanogaster/Dmel_BBDCN941-10_2_R.ab1
45884ac328f74456971e2d7a34af42e6 *extdata/Drosophila_melanogaster/Dmel_BBDEE689-10_1_F.ab1
2a0417331905273fbcc0b386c64ae852 *extdata/Drosophila_melanogaster/Dmel_BBDEE689-10_2_R.ab1
4ccbe7adfb95082e9ecd705ec35c640c *extdata/Drosophila_melanogaster/Dmel_PHDIP946-11_1_F.ab1
f65e64eb433067e4225d0c17370c4b91 *extdata/Drosophila_melanogaster/Dmel_PHDIP946-11_2_R.ab1
74894d6be4690a383dc986759b6473e5 *extdata/Drosophila_melanogaster/Dmel_TDWGB557-10_1_F.ab1
a78b19621707f2996b3db7846a62e146 *extdata/Drosophila_melanogaster/Dmel_TDWGB557-10_2_R.ab1
f2bd34eab10486a8b9977d9d20a86549 *extdata/Drosophila_melanogaster/Dmel_TDWGB669-10_1_F.ab1
5a6c7b3c5fa1db025dbcfc58796e8f69 *extdata/Drosophila_melanogaster/Dmel_TDWGB669-10_2_R.ab1
713809fc8b54efbdad551b6679147fe2 *extdata/Drosophila_melanogaster/TRACE_FILE_INFO.txt
89a06cbca6657f1f27ca999392cc6f39 *extdata/README.md
2eb055b41b7ca627f257650864f571b5 *extdata/ab1/SangerAlignment/names_conversion.csv
d301b248ce7a000a1c8528c5143e749d *extdata/ab1/SangerAlignment/names_conversion_all.csv
0bed9afa861d0218221622fb3ed7a261 *extdata/ab1/SangerContig/names_conversion_1.csv
8e3899ba3cdc3a856ba54ce572186c0e *extdata/ab1/SangerContig/names_conversion_2.csv
6f95179e398aea408b17fbaa4de2aa04 *extdata/fasta/SangerAlignment/Sanger_all_reads.fa
15ae904c3f9a61c67325f085bcd5aeb3 *extdata/fasta/SangerAlignment/names_conversion.csv
7954a1c2b373194e9635b2ffa75d6796 *extdata/fasta/SangerContig/Achl_ACHLO006-09.fa
01aae8534723da084245034aecdb8062 *extdata/fasta/SangerContig/Achl_RBNII384-13.fa
ef8b0b4498cabe193efff897ead439da *extdata/fasta/SangerContig/names_conversion_1.csv
ad89f9a052a3432e36e5f7d7175c5ca0 *extdata/fasta/SangerContig/names_conversion_2.csv
94de93f12797c56ccb813cae7ba481fe *extdata/fasta/SangerRead/Achl_ACHLO006-09_1_F.fa
d41d8cd98f00b204e9800998ecf8427e *extdata/fasta/SangerRead/Achl_ACHLO006-09_1_F.fast
c6e0c5857078b4127bdc390721dc0aa4 *extdata/fasta/SangerRead/Achl_ACHLO006-09_2_R.fa
61217db563aa4ee7f420a84516e968dc *help/AnIndex
3932cc0fae448899e3bfc6619bba3fd2 *help/ChromatogramParam-class.html
8b325bb2c0d8e92a78094e926e6ca976 *help/MakeBaseCalls+2CSangerRead-method.html
2e6ad56fcba0acc069fd31cc169cc0bb *help/MakeBaseCalls-methods.html
2e6ad56fcba0acc069fd31cc169cc0bb *help/MakeBaseCalls.html
439fd57eeae67a6c504ec7162a910222 *help/ObjectResults-class.html
8bd911ac417659841ecbd643dc9f7ca3 *help/QualityReport-class-qualityBasePlot.html
22c7b5994e298b5bd2897b80837a9a92 *help/QualityReport-class-updateQualityParam.html
d7d5415658c375c64f9fdeadb2c5b974 *help/QualityReport-class.html
fd0f7928c9ee0244253dce51bb72160e *help/SangerAlignment-class-generateReportSA.html
f992b39a1f0d5f7fb74d01bfe7c72bfc *help/SangerAlignment-class-launchAppSA.html
86ecbcca38f895018a6255cf3a5b7066 *help/SangerAlignment-class-updateQualityParam.html
3c70b05cd5139b14e1dba03ac480f0b5 *help/SangerAlignment-class-writeFastaSA.html
9689515897a40d74b667be783ff92d94 *help/SangerAlignment-class.html
fe396f7e568e2125a5b7b9ec2d2f53f6 *help/SangerAlignment.html
0c0e2383b65d3c443878fd8132fe6027 *help/SangerContig-class-generateReportSC.html
017564f0c5dea2ea72d1e4150e05bf58 *help/SangerContig-class-launchAppSC.html
dc8ba68dc68afcb41ee8b88dd652ab14 *help/SangerContig-class-readTable.html
ca3f96a4a684afd5fac75fe7debdaf82 *help/SangerContig-class-updateQualityParam.html
8fe0040f75b49e24e6e51f1888061882 *help/SangerContig-class-writeFastaSC.html
0113295d3cddbdd2d98469a92321f5af *help/SangerContig-class.html
5ee74cfc562696bcee4d27fe9a2bd039 *help/SangerContig.html
8b325bb2c0d8e92a78094e926e6ca976 *help/SangerRead-class-MakeBaseCalls.html
185f56f3160782e0708416a640d5a73f *help/SangerRead-class-generateReportSR.html
677929c38e5e14226c3d1a6ebffc01fb *help/SangerRead-class-qualityBasePlot.html
e91ed0103bc390376a734d442e1e78d0 *help/SangerRead-class-readTable.html
bcfec80dfdfc133a7213bf680a894f62 *help/SangerRead-class-updateQualityParam.html
3260c62dc568411cd7ccff3197434f08 *help/SangerRead-class-writeFastaSR.html
e389ea8191493124fb7eda1d49469bfe *help/SangerRead-class.html
88e608e08e81b41e312cd20643e2473a *help/SangerRead.html
96ffcb0523912f8db1af90144bb9d00f *help/aliases.rds
d064c7d506abfad58c56b3598b742b14 *help/generateReport.html
fd0f7928c9ee0244253dce51bb72160e *help/generateReportSA+2CSangerAlignment-method.html
f20761d56039d6e077562d36f04549e2 *help/generateReportSA-methods.html
f20761d56039d6e077562d36f04549e2 *help/generateReportSA.html
0c0e2383b65d3c443878fd8132fe6027 *help/generateReportSC+2CSangerContig-method.html
a8ebab09d5afe7d29cec8059537b0417 *help/generateReportSC-methods.html
a8ebab09d5afe7d29cec8059537b0417 *help/generateReportSC.html
185f56f3160782e0708416a640d5a73f *help/generateReportSR+2CSangerRead-method.html
7e7c229b6dd26fea90f1394bbe88eb2e *help/generateReportSR-methods.html
7e7c229b6dd26fea90f1394bbe88eb2e *help/generateReportSR.html
08d59a338e5f62db9eb3e8c9f2b834ad *help/launchApp.html
f992b39a1f0d5f7fb74d01bfe7c72bfc *help/launchAppSA+2CSangerAlignment-method.html
eccb05a225edfeaaec5f14f1894a0f4f *help/launchAppSA-methods.html
eccb05a225edfeaaec5f14f1894a0f4f *help/launchAppSA.html
017564f0c5dea2ea72d1e4150e05bf58 *help/launchAppSC+2CSangerContig-method.html
1590a7b2f94cdb5ed849703bcf3c4385 *help/launchAppSC-methods.html
1590a7b2f94cdb5ed849703bcf3c4385 *help/launchAppSC.html
f997ef444733a284ccc7a81ddb3e0550 *help/paths.rds
8bd911ac417659841ecbd643dc9f7ca3 *help/qualityBasePlot+2CQualityReport-method.html
677929c38e5e14226c3d1a6ebffc01fb *help/qualityBasePlot+2CSangerRead-method.html
16ca91c76c1285f175d1b5cc1ca642f4 *help/qualityBasePlot-methods.html
16ca91c76c1285f175d1b5cc1ca642f4 *help/qualityBasePlot.html
3795eb9e0861968a46442b59aab2f063 *help/qualityReportData.html
dc8ba68dc68afcb41ee8b88dd652ab14 *help/readTable+2CSangerContig-method.html
e91ed0103bc390376a734d442e1e78d0 *help/readTable+2CSangerRead-method.html
8167e7a128877c5d894c01677869e11c *help/readTable-methods.html
8167e7a128877c5d894c01677869e11c *help/readTable.html
ce2c633ad626f02594d873f9d0d636bb *help/sangerAlignmentData.html
d160d4a18aa3a1bab75f3d7c13402ec3 *help/sangerContigData.html
8e9a64b360cc6fd8b9890503a3944223 *help/sangerReadFData.html
f8a4a47e440fd87db4869c2e5dd32a94 *help/sangeranalyseR.html
75e5441c852e83d2744dc652e0d330f6 *help/sangeranalyseR.rdb
4dea3106da70b5158867ace59def7a92 *help/sangeranalyseR.rdx
22c7b5994e298b5bd2897b80837a9a92 *help/updateQualityParam+2CQualityReport-method.html
86ecbcca38f895018a6255cf3a5b7066 *help/updateQualityParam+2CSangerAlignment-method.html
ca3f96a4a684afd5fac75fe7debdaf82 *help/updateQualityParam+2CSangerContig-method.html
bcfec80dfdfc133a7213bf680a894f62 *help/updateQualityParam+2CSangerRead-method.html
aa38c2f988cfe294b330541b804f6b83 *help/updateQualityParam-methods.html
aa38c2f988cfe294b330541b804f6b83 *help/updateQualityParam.html
c1f60995a164931a411ebfa006d94416 *help/writeFasta.html
3c70b05cd5139b14e1dba03ac480f0b5 *help/writeFastaSA+2CSangerAlignment-method.html
3ab5ab9e7c7e5c783b451c32fad4480a *help/writeFastaSA-methods.html
3ab5ab9e7c7e5c783b451c32fad4480a *help/writeFastaSA.html
8fe0040f75b49e24e6e51f1888061882 *help/writeFastaSC+2CSangerContig-method.html
a5749a7b15c5a953095e9e814ea14727 *help/writeFastaSC-methods.html
a5749a7b15c5a953095e9e814ea14727 *help/writeFastaSC.html
3260c62dc568411cd7ccff3197434f08 *help/writeFastaSR+2CSangerRead-method.html
849a61a2c8f54d5edb2340ff5a988133 *help/writeFastaSR-methods.html
849a61a2c8f54d5edb2340ff5a988133 *help/writeFastaSR.html
67d9934943f2dbb28b5f01317391aba8 *html/00Index.html
91ebc0501ef3af01ea59285b6c33e280 *html/ChromatogramParam-class.html
01a339c7530763c20e1446213224c062 *html/MakeBaseCalls-methods.html
792bdb357b5bad8c96e21703c615c6bb *html/ObjectResults-class.html
2cf272ae54a033e6c19debc5c9e6778f *html/QualityReport-class-qualityBasePlot.html
4bb05c2c3d478897a017a0c24e65facb *html/QualityReport-class-updateQualityParam.html
9cfe7bab1a634a96f63b4ec14ac7626a *html/QualityReport-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
9a05773612cb4928c784f0cae929af0c *html/SangerAlignment-class-generateReportSA.html
3818df73d5860012e2962cd9bb6ed0e9 *html/SangerAlignment-class-launchAppSA.html
817d2d6d92030f4ad6ba988718778da0 *html/SangerAlignment-class-updateQualityParam.html
51ba9af54d385dbe819c5280911f1a02 *html/SangerAlignment-class-writeFastaSA.html
fec41f3b661d1f60fe932cc1b9292fe3 *html/SangerAlignment-class.html
0d847b2f1b1bd493839ad9681ba1defd *html/SangerAlignment.html
bf03ddd3df96e128cb3ceef5416e72bc *html/SangerContig-class-generateReportSC.html
07bcf2a141f633b36cf5839f2fb3d6a0 *html/SangerContig-class-launchAppSC.html
432a798365fbfcdc618e393fd6dca2f0 *html/SangerContig-class-readTable.html
f77c782c2e640d7f1209be9c23bf215f *html/SangerContig-class-updateQualityParam.html
217f8cf253d771d2e91be84d3aade5cb *html/SangerContig-class-writeFastaSC.html
e773f4624688f710b40dcc1b5be3744f *html/SangerContig-class.html
5fc2beedbfadf5e37b2fa3bdd3ba382a *html/SangerContig.html
3da30b35d410f317bc0557f34ddeecc0 *html/SangerRead-class-MakeBaseCalls.html
812434dd71da32992dad02a16f3f2f02 *html/SangerRead-class-generateReportSR.html
91220568430f5e398dcbe3fd0f09ecbb *html/SangerRead-class-qualityBasePlot.html
50e7fdf1d8f3b796bb281e4e448aa02a *html/SangerRead-class-readTable.html
8f833ec13424d7f90f9cc2a75a5a7684 *html/SangerRead-class-updateQualityParam.html
05b37040a24fbe00486cb8e292684e5c *html/SangerRead-class-writeFastaSR.html
729283b063f52863e82519c65df32698 *html/SangerRead-class.html
8bace938003a054eef9b70d3541317b8 *html/SangerRead.html
ad7233b8f4dfb2ff9c49127b6d3aa307 *html/generateReport.html
5fcedef89a26cc2a9f79cb798468e8c9 *html/generateReportSA-methods.html
d6e6577612b828b6b87bc1c2f744ce53 *html/generateReportSC-methods.html
64027c5a66f64b185bac19b32731ad4b *html/generateReportSR-methods.html
3b10fe562224614c07edb3bc688e3042 *html/launchApp.html
3d5bef2e966e29fe4e5b50a929f74541 *html/launchAppSA-methods.html
523cc88b39e94d73c13f70b73b5e194f *html/launchAppSC-methods.html
cba58d7f73aab2e301e0ac3f753958af *html/qualityBasePlot-methods.html
83c06bc2caa371e1747881b1b17a4ed4 *html/qualityReportData.html
9cb073ff2e95ed3f51ac2119c476a60d *html/readTable-methods.html
9e35fc8fa10418fa693cf77bb47cacd7 *html/sangerAlignmentData.html
31a37658fc4a1e68588b7e93bdd7edcc *html/sangerContigData.html
58980f9ea3c9e830125350175424ee52 *html/sangerReadFData.html
fc42d53b0165250dbaf859d72d7cb98a *html/sangeranalyseR.html
6b6cb24c60e411110cba29917f2e7efe *html/updateQualityParam-methods.html
4ecd7392718e9b90fdd298632fdbb176 *html/writeFasta.html
9dffc635cc06366717400009f21cbbe7 *html/writeFastaSA-methods.html
b5a6bf123129a60b3634c26ff6055c1f *html/writeFastaSC-methods.html
d958a91ee2537f4ed7da795485e25a78 *html/writeFastaSR-methods.html
405075980936e4392d1afe22e01c58e7 *rmd/SangerAlignment_Report.Rmd
8251f98be9df622e9c7ff0a32bbf53ef *rmd/SangerContig_Report.Rmd
f949008f1f8506e5416fc0aff6ece8ce *rmd/SangerRead_Report_ab1.Rmd
34e719e208fdd557793734ea56188deb *rmd/SangerRead_Report_fasta.Rmd
