16c46ab9a666797523c52a116a3c1e93 *CITATION
4e1b0bcd22f5bbfd55d3f159e0131265 *DESCRIPTION
81c66aa8111d8ab9c1426ed9961f3e3b *INDEX
8d4d17ec66c970a30cee652f9f1c4380 *Meta/Rd.rds
8503e676975364d771072956cdbca633 *Meta/features.rds
241db1807b706f97ae8b5cab6d622fec *Meta/hsearch.rds
8ba0b9a84282d829dd259154c53c3ca6 *Meta/links.rds
3675c7f728a165be2fa1bc5d1e075c3d *Meta/nsInfo.rds
325bef5b9463b8014b4a66557164bbfb *Meta/package.rds
9a4c5c6fc5b0b4342bc7a76f1f9b0e74 *Meta/vignette.rds
ee5e13c6344dd81e1ae6ae2e5c21aaa8 *NAMESPACE
3fdcdc83f41a05d57b850231e2e1ab49 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/pram
60796685d8facd3df12faa64aadcbdaf *R/pram.rdb
70120d381f3b788d38c651280fe4774b *R/pram.rdx
40c7d77eb6c2ae813b24ad4eb9ef0b80 *doc/index.html
824b85569f10f7b0abc4c47926d0b13a *doc/pram.R
a4e2076d4e1656856bc8f3c1da25efc5 *doc/pram.Rmd
f09c09c04d9f953f6edb23f888196476 *doc/pram.pdf
6bc8dfb54b9e62665f41741b2609367c *extdata/bam/CMPRep1.sortedByCoord.clean.bam
3c00bc5d9e5b4e0f16b1f0a1821d63d7 *extdata/bam/CMPRep1.sortedByCoord.clean.chr10.plus.bam
cd18f07d323eec235e4f443244268ec9 *extdata/bam/CMPRep1.sortedByCoord.clean.chr12.minus.bam
ddf08b29acc438c11554daf480bf1699 *extdata/bam/CMPRep1.sortedByCoord.raw.bam
aca49d6b6a2ffd81f81b2f56d0b40e02 *extdata/bam/CMPRep2.sortedByCoord.clean.bam
ab783a9429dbd68054ab1e202589d6f6 *extdata/bam/CMPRep2.sortedByCoord.raw.bam
c72525196731ba5c7a453634e02c245e *extdata/benchmark/plcf.tsv
0dc29665caca31ba0542276d3b7609c0 *extdata/benchmark/tgt.tsv
312a28fd4191383057964266227d6622 *extdata/chromsize/hg19.tsv.gz
0ec9c7b98e125033f6b712211c82e71e *extdata/chromsize/hg38.tsv.gz
7a546ec366f0387ef4d6da49fec1b6d1 *extdata/chromsize/mm10.tsv.gz
bcfe201a8da1b4b4dd7e69d6962d82fc *extdata/chromsize/mm9.tsv.gz
c91b4bd76f65ff4982a7c32187a194de *extdata/demo/SZP.bam
2bff64cd1a98e2a008a3a05aa3fa54e0 *extdata/demo/TLC.bam
c8ff38a72ebd56b20e9b954a12f6800e *extdata/demo/in.gtf
88418451ac78fa3dd45bf4bd49a8f5e5 *extdata/gtf/defIgRanges_in.gtf
162b125396864c90049ee15a5fca22a6 *extdata/gtf/gnc_v24_minus_chr18.gtf
a7cc0cbac78919adb1e6fcb74f8e6ee1 *extdata/gtf/ig_mm10_chr12.gtf
a3b6aa1d02a8bb0f7997d6607c45caf3 *extdata/gtf/selModel_in.gtf
0624089e8191beec85a3ce578e059b08 *extdata/gtf/selModel_out.gtf
e88e53a580084e44f21144a99e466015 *extdata/vignettes/pram.pdf
b97f7004555545b4e69a075419d407b2 *help/AnIndex
09c931b558dc7e37f2f0ad6145a4af11 *help/aliases.rds
ce6bc1f3ee830e05acbea95274bb1355 *help/buildModel.html
4d8f61501bd3ba59adcbf4d911594b02 *help/defIgRanges.html
3bbc1c695702a9644cc6313445444abe *help/evalModel+2CGRanges+2CGRanges-method.html
3bbc1c695702a9644cc6313445444abe *help/evalModel+2Ccharacter+2Ccharacter-method.html
3bbc1c695702a9644cc6313445444abe *help/evalModel+2Ccharacter+2Cdata.table-method.html
3bbc1c695702a9644cc6313445444abe *help/evalModel+2Cdata.table+2Cdata.table-method.html
3bbc1c695702a9644cc6313445444abe *help/evalModel.html
cf8261d13220af76d5a21500ab696eef *help/paths.rds
8a8fe7aa24820ab165d78fe9b0d6d3a5 *help/pram.rdb
40e05c68e1ff3185052f280acb3a1c6c *help/pram.rdx
f4c2ca20532eb24c2d052052a081a7a7 *help/prepIgBam.html
e5b0f933cd5f3f6598ffa527e9ba41a9 *help/runPRAM.html
0687592606a9a8e90edce818a55192da *help/selModel.html
cbb7fc3371fc32ceea66f3711814b110 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
b3b7e4440970dce33673fb912f0c127d *html/buildModel.html
bc4b0f736d40c98a128e41ad0d7267a1 *html/defIgRanges.html
050d9ed8e3b89d4dc6a6f212e845380a *html/evalModel.html
b85911024dcc3d99897073d91398401a *html/prepIgBam.html
7d7f352358c539f0a49e85c076e42778 *html/runPRAM.html
6442bebba307c2457c56db82cbd15fb2 *html/selModel.html
