geneprofiler {pcaExplorer} | R Documentation

## Extract and plot the expression profile of genes

### Description

Extract and plot the expression profile of genes

### Usage

    geneprofiler(se, genelist = NULL, intgroup = "condition", plotZ = FALSE)

### Arguments

`se` | A `DESeqDataSet` object, or a `DESeqTransform` object.
`genelist` | An array of characters, including the names of the genes of interest of which the profile is to be plotted
`intgroup` | A factor, needs to be in the `colnames` of `colData(se)`
`plotZ` | Logical, whether to plot the scaled expression values. Defaults to `FALSE`

### Value

A plot of the expression profile for the genes

### Examples

    dds <- makeExampleDESeqDataSet_multifac(betaSD_condition = 3, betaSD_tissue = 1)
    rlt <- DESeq2::rlogTransformation(dds)
    geneprofiler(rlt, paste0("gene", sample(1:1000, 20)))
    geneprofiler(rlt, paste0("gene", sample(1:1000, 20)), plotZ = TRUE)

[Package pcaExplorer version 2.20.2 Index]