aggregate_rows {orthogene}

R Documentation

Aggregate rows of matrix

Description

Aggregate rows of a matrix using a grouping vector.

Usage

aggregate_rows(
  X,
  groupings,
  FUN = "sum",
  method = c("monocle3", "stats", "delayedarray"),
  as_sparse = TRUE,
  as_DelayedArray = TRUE,
  dropNA = TRUE,
  verbose = TRUE
)

Arguments

X	Input matrix.
groupings	Gene groups of the same length as nrow(X).
FUN	Aggregation function (DEFAULT: "sum").
method	Aggregation method.
as_sparse	Convert aggregated matrix to sparse matrix.
as_DelayedArray	Convert aggregated matrix to DelayedArray.
dropNA	Drop genes assigned to NA in groupings.
verbose	Print messages.

Value

Aggregated matrix

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