plot_karyogram {multicrispr}

R Documentation

Karyo/Interval Plot GRanges(List)

Description

Karyo/Interval Plot GRanges(List)

Usage

plot_karyogram(grlist, title = unique(genome(grlist)))

Arguments

grlist	GRanges-class
title	plot title

Value

list

See Also

plot_intervals

Examples

# Plot GRanges
    bedfile <-  system.file('extdata/SRF.bed',  package = 'multicrispr')
    gr <- bed_to_granges(bedfile, 'mm10', plot = FALSE)
    plot_karyogram(gr)
  
# Plot GRangesList
    flanks  <- up_flank(gr, stranded=FALSE)
    grlist <- GenomicRanges::GRangesList(sites = gr, flanks = flanks)
    plot_karyogram(grlist)

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