index_targets {multicrispr}

R Documentation

Index targets

Description

Bowtie index targets

Usage

index_targets(
  targets,
  bsgenome = getBSgenome(genome(targets)[1]),
  outdir = OUTDIR,
  verbose = TRUE
)

Arguments

targets	GRanges-class
bsgenome	BSgenome-class
outdir	string: output directory
verbose	TRUE (default) or FALSE

Value

invisible(targetdir)

Examples

require(magrittr)
bsgenome <- BSgenome.Mmusculus.UCSC.mm10::BSgenome.Mmusculus.UCSC.mm10
bedfile  <- system.file('extdata/SRF.bed', package = 'multicrispr')
targets <- extend(bed_to_granges(bedfile, genome = 'mm10'))
index_targets(targets, bsgenome)

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