add_inverse_strand {multicrispr}

R Documentation

Add inverse strand

Description

Add inverse strand

Usage

add_inverse_strand(gr, verbose = FALSE, plot = FALSE, ...)

Arguments

gr	GRanges-class
verbose	TRUE or FALSE (default)
plot	TRUE or FALSE (default)
...	plot_intervals arguments

Value

GRanges-class

Examples

# PE example
#-----------
    require(magrittr)
    bsgenome <- BSgenome.Hsapiens.UCSC.hg38::BSgenome.Hsapiens.UCSC.hg38  
    gr <- char_to_granges(c(PRNP = 'chr20:4699600:+',             # snp
                            HBB  = 'chr11:5227002:-',             # snp
                            HEXA = 'chr15:72346580-72346583:-',   # del
                            CFTR = 'chr7:117559593-117559595:+'), # ins
                          bsgenome)
    add_inverse_strand(gr, plot = TRUE)
# TFBS example
#-------------
    bedfile <- system.file('extdata/SRF.bed', package='multicrispr')
    gr <- bed_to_granges(bedfile, genome = 'mm10')
    add_inverse_strand(gr)

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