pvalues_fisher_method {moanin}

R Documentation

Fisher's method to combine pvalues

Description

Combines all p-values per rows.

Usage

pvalues_fisher_method(pvalues)

Arguments

pvalues

a matrix of pvalues, with columns corresponding to different tests or sources of p-values, and rows corresponding to the genes from which the p-values come.

Value

a vector of p-values, one for each row of pvalues, that is the result of Fisher's combined probability test applied to the p-values in that row.

Examples

data(exampleData)
moanin <- create_moanin_model(data=testData,meta=testMeta)
contrasts <- create_timepoints_contrasts(moanin,"C", "K")
deTimepoints=DE_timepoints(moanin, 
  contrasts=contrasts, use_voom_weights=FALSE)
fisherPval=pvalues_fisher_method(
  deTimepoints[,grep("pval",colnames(deTimepoints))])
head(fisherPval)

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