makeTreeSummarizedExperimentFromPhyloseq {mia}

R Documentation

Coerce a phyloseq object to a TreeSummarizedExperiment

Description

makeTreeSummarizedExperimentFromPhyloseq converts phyloseq objects into TreeSummarizedExperiment objects.

Usage

makeTreeSummarizedExperimentFromPhyloseq(obj)

Arguments

obj	a phyloseq object

Details

All data stored in a phyloseq object is transfered.

Value

An object of class TreeSummarizedExperiment

See Also

makeSummarizedExperimentFromBiom makeTreeSummarizedExperimentFromDADA2 loadFromQIIME2 loadFromMothur

Examples

if (requireNamespace("phyloseq")) {
    data(GlobalPatterns, package="phyloseq")
    makeTreeSummarizedExperimentFromPhyloseq(GlobalPatterns)
    data(enterotype, package="phyloseq")
    makeTreeSummarizedExperimentFromPhyloseq(enterotype)
    data(esophagus, package="phyloseq")
    makeTreeSummarizedExperimentFromPhyloseq(esophagus)
}

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