tmb {maftools}

R Documentation

Estimate Tumor Mutation Burden

Description

Estimates Tumor Mutation Burden in terms of per megabases

Usage

tmb(maf, captureSize = 50, logScale = TRUE)

Arguments

maf	maf MAF object
captureSize	capture size for input MAF in MBs. Default 50MB.
logScale	Default TRUE. For plotting purpose only.

Value

data.table with TMB for every sample

Examples

laml.maf <- system.file("extdata", "tcga_laml.maf.gz", package = "maftools")
laml <- read.maf(maf = laml.maf)
tmb(maf = laml)

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