show_cpout_features {imcRtools} | R Documentation

## Display all features measured by CellProfiler.

### Description

Searchable datatable object of cell and image features as extracted by CellProfiler.

### Usage

    show_cpout_features(
      path,
      display = c("cell_features", "image_features"),
      cell_features = "var_cell.csv",
      image_features = "var_Image.csv"
    )

### Arguments

`path` | full path to the CellProfiler output folder
`display` | single character indicating which features to display. Accepted entries are `cell_features` to display extracted single-cell features or `image_features` to display extracted image-level features.
`cell_features` | single character indicating the name of the file storing the extracted cell features.
`image_features` | single character indicating the name of the file storing the extracted image features.

### Value

a `datatable` object

### Author(s)

Nils Eling (nils.eling@dqbm.uzh.ch)

### See Also

`read_cpout` for the CellProfiler reader function

### Examples

    path <- system.file("extdata/mockData/cpout", package = "imcRtools")

    # Display cell features
    show_cpout_features(path)

    # Display image features
    show_cpout_features(path, display = "image_features")

[Package imcRtools version 1.0.2 Index]