columnSelectionColorMap {iSEE} | R Documentation

## Define the selection colormap

### Description

Define the colormap when coloring points in a DotPlot based on their assigned multiple row/column selection.

### Usage

    columnSelectionColorMap(x, levels)

    rowSelectionColorMap(x, levels)

### Arguments

`x` | An ExperimentColorMap object.
`levels` | Character vector containing the available levels of a `ColorBy` column derived from a series of multiple selections, usually generated by `multiSelectionToFactor` on the selection information in `row_selected` or `col_selected`.

### Details

The `"unselected"` level is always assigned the grey color; colors for all other levels are generated by `colDataColorMap(x)` or `rowDataColorMap(x)`. The `"active"` level is always assigned the first color from these functions, regardless of whether it is present in `levels`. This aims to provide some consistency in the coloring when the selections change.

### Value

A named character vector of colors for each level in `levels`.

### Author(s)

Aaron Lun

### Examples

    ecm <- ExperimentColorMap()
    columnSelectionColorMap(ecm, c("active", "unselected"))
    columnSelectionColorMap(ecm, c("active", "saved1", "unselected"))
    columnSelectionColorMap(ecm, c("saved1", "unselected"))
    columnSelectionColorMap(ecm, c("saved1"))

[Package iSEE version 2.6.0 Index]