plot_scatter {iCOBRA} | R Documentation

## Plot scatter plots

### Description

Plot scatter plots, indicating the relationship between observed values and a continuous truth.

### Usage

    plot_scatter(
      cobraplot,
      title = "",
      stripsize = 10,
      titlecol = "black",
      pointsize = 3,
      doflip = FALSE,
      dolog = FALSE
    )

### Arguments

`cobraplot` | A `COBRAPlot` object.
`title` | A character string giving the title of the plot.
`stripsize` | A numeric value giving the size of the strip text, when the results are stratified by an annotation.
`titlecol` | A character string giving the color of the title.
`pointsize` | A numeric value giving the size of the plot characters.
`doflip` | A logical indicating whether to flip the axes when results are stratified by an annotation. By default (`doflip = FALSE`), stratification levels are shown as columns and methods as rows in the plot.
`dolog` | A logical indicating whether to log10-transform values before plotting.

### Value

A ggplot object

### Author(s)

Charlotte Soneson

### Examples

    data(cobradata_example)
    cobraperf <- calculate_performance(cobradata_example, cont_truth = "logFC",
                                       aspects = "scatter")
    cobraplot <- prepare_data_for_plot(cobraperf, colorscheme = "Dark2",
                                       incltruth = TRUE)
    plot_scatter(cobraplot)

[Package iCOBRA version 1.22.2 Index]