plot_deviation {iCOBRA} | R Documentation

## Plot deviations

### Description

Plot the deviations between observed scores and the continuous truth variable.

### Usage

    plot_deviation(
      cobraplot,
      title = "",
      stripsize = 15,
      titlecol = "black",
      xaxisrange = NULL,
      plottype = "boxplot",
      dojitter = TRUE,
      transf = "raw"
    )

### Arguments

`cobraplot` | A `COBRAPlot` object.
`title` | A character string giving the title of the plot.
`stripsize` | A numeric value giving the size of the strip text, when the results are stratified by an annotation.
`titlecol` | A character string giving the color of the title.
`xaxisrange` | A numeric vector with two elements, giving the lower and upper boundary of the x-axis, respectively.
`plottype` | Either "boxplot" or "violinplot", indicating what type of plot to make.
`dojitter` | A logical indicating whether to include jittered data points or not.
`transf` | A character indicating the transformation to apply to the deviations before plotting. Must be one of "raw", "absolute" or "squared"

### Value

A ggplot object

### Author(s)

Charlotte Soneson

### Examples

    data(cobradata_example)
    cobraperf <- calculate_performance(cobradata_example, cont_truth = "logFC",
                                       aspects = "deviation")
    cobraplot <- prepare_data_for_plot(cobraperf, colorscheme = "Dark2",
                                       incltruth = TRUE)
    plot_deviation(cobraplot)

[Package iCOBRA version 1.22.2 Index]