6841c3e407b7cecdf26485fe2877c564 *CITATION
954db8b51f9a7afca31b1f00ccf63cd2 *DESCRIPTION
f263cab3588c2f17ecb9aae1ae4ac387 *INDEX
a4fc375f63b59448868f9c21e23f8ae6 *Meta/Rd.rds
8503e676975364d771072956cdbca633 *Meta/features.rds
7d2c2c78bc7be4c94323fffb2e28b9ca *Meta/hsearch.rds
6cc3d2ab62f4493a08d94a487a2f9865 *Meta/links.rds
63fa5aca31707406891319c49f71f832 *Meta/nsInfo.rds
ef6cfa2e825d541e340405220c7e1bf6 *Meta/package.rds
99c2efda71dc4d6da9cdf8cd6ba92aa5 *Meta/vignette.rds
720167ce2456768652ed7e56aa5e04f2 *NAMESPACE
2006d41fb8c790a5a260d649dd6b6d0c *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/groHMM
5cc370f7520edc20142d13ab8c0fad1c *R/groHMM.rdb
bcb48ba4f63905078b678d47fc79859c *R/groHMM.rdx
234c840da7636a6ae96a806285e79b70 *doc/groHMM.R
9eaf9c85123490870c518d5c444fa6ae *doc/groHMM.Rnw
912c25fb915fd82c1ad456ecdbc55167 *doc/groHMM.pdf
dca7aaf2dcd1c1cdec8cc9200c25140d *doc/index.html
1841d24ed32b10fb1c822130573a9dda *extdata/S0mR1.bam
3d2b9726ac40180c6d991ddecbaf53ac *extdata/S40mR1.bam
e2a57607a39751e6f29f97bc5aba9d51 *extdata/Vignette.RData
d61748b5a1ac653beaff75b19660339a *help/AnIndex
0066782c232daef31cd2e00228507c7d *help/RgammaMLE.html
20ff6e6cccca2a2fb4e2586a54f09043 *help/Rnorm.exp.html
3a5d167ad09e21cb44b514409d20f1b3 *help/Rnorm.html
d743d3f6febda38ea97114c3e66fc996 *help/aliases.rds
73c6139476351686f1550b96809ae0ab *help/averagePlot.html
1c8ce04d23d3c56f9c599750890faaf0 *help/breakTranscriptsOnGenes.html
ed9b9db4338a6631000c1e950e8ab54e *help/combineTranscripts.html
c26704f05e099a720a8c8cfc932ea0bf *help/countMappableReadsInInterval.html
cef802981358fa066bbb8e0375368036 *help/detectTranscripts.html
1ca5c06ddd7676707bad5e53ccbcf971 *help/evaluateHMMInAnnotations.html
ceed99c8199892393c04bed3de14a185 *help/expressedGenes.html
b7672dafb759894d1e1b80c14548e8e9 *help/getCores.html
f778fcf698b91353ec558fc40ebc4eeb *help/getTxDensity.html
ff09c468df9dc3703feb14ecc881b053 *help/groHMM-package.html
ff09c468df9dc3703feb14ecc881b053 *help/groHMM.html
890cad98453efee61239a307854d701e *help/groHMM.rdb
6941a197807c3d6732a6d43430ae6853 *help/groHMM.rdx
741b26e289ef1cf4358417b43347616e *help/limitToXkb.html
115792e7fe5dd34968aa7f1bfde15750 *help/makeConsensusAnnotations.html
b0d1523d4c21f2602286cc6638de5b2d *help/metaGene.html
912924d1187a14f6b5e49d15895f6ab3 *help/metaGeneMatrix.html
51667eb86f07c4accca2109a19d93656 *help/metaGene_nL.html
0aea6cc49d4abff325302278da6b30a0 *help/paths.rds
917b0528ee0791c79f177eb01175dadd *help/pausingIndex.html
6846b0b2becfdced021bfc0303352a5c *help/polymeraseWave.html
a9c53105ca541968d17398ccccfe6e79 *help/readBed.html
2c6612edf485d84f3c46270e744e621c *help/runMetaGene.html
cb4099f03f6a9d169c724a27b8b42c46 *help/tlsDeming.html
ac05247909c4de09e7703a3f292739a9 *help/tlsLoess.html
271cba21c1de83c721ac02eee042c473 *help/tlsSvd.html
714a060a309e3678e1169a277aa7d9b4 *help/windowAnalysis.html
343112ec87dbadf853147edc06fc9cbc *help/writeWiggle.html
47e27ff51c99ed4d48228fac2b19dee7 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
591d4187c58eb4999f6dbdd6d51c5903 *html/RgammaMLE.html
ab3b30b97f0cdf95f57c157f875f10bd *html/Rnorm.exp.html
13335527df77dbf8fe70318889834fca *html/Rnorm.html
3958267c01cb332b821589caa6433ce9 *html/averagePlot.html
b91a18b407a098b23f0b682c392fe42d *html/breakTranscriptsOnGenes.html
38ca28844605b9256fee45dd88486c8e *html/combineTranscripts.html
bd51ce64187e3410fab239014db5b7b9 *html/countMappableReadsInInterval.html
9fc0b82fefaaeff417b9123c29fcdf86 *html/detectTranscripts.html
0a3328d29d2e323e6514c7989b952069 *html/evaluateHMMInAnnotations.html
ce657dbbc92215f34770e2df6850389b *html/expressedGenes.html
b5fdc6f86c6633e9e36d768bb194bc33 *html/getCores.html
6d6c980139d93f871e3e2d0561e5bdf2 *html/getTxDensity.html
033fb5395825b78c5ed4f363656213f5 *html/groHMM-package.html
9dc1fbe8a9ead060f0d096da3bc893c0 *html/limitToXkb.html
55bd5d77eb387271bb14aedc4d6f02f1 *html/makeConsensusAnnotations.html
0a77dbad5d318a0650a7cd9b4bba396a *html/metaGene.html
09f4fa48b629455fbfde64f14cd26caf *html/metaGeneMatrix.html
fb11f0340dc0fdb0ef6cb4ee5e773aa5 *html/metaGene_nL.html
9a8daafed2746c8a7bc9226bc609ade5 *html/pausingIndex.html
89487fdb8d5af65679f8fa57884d7fec *html/polymeraseWave.html
37e28f63a7c300ec067eb8bb1c61b17b *html/readBed.html
7a03dd62435731fedbd7020624a3fcd5 *html/runMetaGene.html
2f48e29593f5adbbd5632d5dcf74029a *html/tlsDeming.html
8226b6e437e51e6afadead2554b004a5 *html/tlsLoess.html
4754ae0881ec36bcebbdf7d12c159cd0 *html/tlsSvd.html
89425b4536335698d5252b24848a573d *html/windowAnalysis.html
7f0e44c8c1908f4c98e9353c74142f32 *html/writeWiggle.html
6d6d589e45aa51dd013ac9dc43c593df *libs/i386/groHMM.dll
15a59d18792bddca92b46de1c139f134 *libs/x64/groHMM.dll
