metaGene_nL {groHMM} | R Documentation

## Returns a histogram of the number of reads in each section of a moving window of #' variable size across genes.

### Description

Supports parallel processing using mclapply in the 'parallel' package. To change the number of processors, use the argument 'mc.cores'.

### Usage

    metaGene_nL(features, reads, n_windows = 1000, debug = FALSE, ...)

### Arguments

`features` | A GRanges object representing a set of genomic coordinates.
`reads` | A GRanges object representing a set of mapped reads.
`n_windows` | The number of windows to break genes into.
`debug` | If set to TRUE, provides additional print options. Default: FALSE
`...` | Extra argument passed to mclapply

### Value

Returns a vector representing the 'typical' signal across genes of different length.

### Author(s)

Charles G. Danko and Minho Chae

[Package groHMM version 1.28.0 Index]