Plot Multiple Sequence Alignment using 'ggplot2'
![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)
Documentation for package ‘ggmsa’ version 1.0.0
Help Pages
| available_colors | List Color Schemes currently available |
| available_fonts | List Font Families currently available |
| available_msa | List MSA objects currently available |
| facet_msa | segment MSA |
| geom_GC | geom_GC |
| geom_helix | geom_helix |
| geom_msa | geom_msa |
| geom_msaBar | geom_msaBar |
| geom_seed | geom_seed |
| geom_seqlogo | geom_seqlogo |
| gghelix | gghelix |
| ggmsa | ggmsa |
| ggSeqBundle | ggSeqBundle |
| Gram-negative_AKL.fasta | Gram-negative_AKL |
| Gram-positive_AKL.fasta | Gram-positive_AKL |
| GVariation | GVariation |
| LeaderRepeat_All.fa | A sample DNA alignment sequences |
| plot | plot method for SeqDiff object |
| plot-method | plot method for SeqDiff object |
| readSSfile | readSSfile |
| Rfam | Rfam |
| sample.fasta | A sample data used in ggmsa |
| seedSample.fa | microRNA data used in ggmsa |
| seqdiff | seqdiff |
| SeqDiff-class | show method |
| seqlogo | seqlogo |
| sequence-link-tree.fasta | sequence-link-tree |
| show | show method |
| show-method | show method |
| simplot | simplot |
| tidy_msa | tidy_msa |
| tp53.fa | TP53 MSA |
| TP53_genes.xlsx | genome locus |