addStatsFromCSV {fishpond}

R Documentation

Read statistics and nulls from CSV file

Description

After running splitSwish and the associated Snakefile, this function can be used to gather and add the results to the original object. See the alevin section of the vignette for an example.

Usage

addStatsFromCSV(y = NULL, infile, estPi0 = FALSE)

Arguments

y	a SummarizedExperiment (if NULL, function will output a data.frame)
infile	character, path to the summary.csv file
estPi0	logical, see swish

Value

the SummarizedExperiment with metadata columns added, or if y is NULL, a data.frame of compiled results

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