getGenes {dittoSeq}

R Documentation

Returns the names of all genes of a target object.

Description

Returns the names of all genes of a target object.

Usage

getGenes(object, assay = .default_assay(object), swap.rownames = NULL)

Arguments

object	A Seurat, SingleCellExperiment, or SummarizedExperiment object.
assay	Single string or integer that sets which set of seq data inside the object to check.
swap.rownames	String. For SummarizeedExperiment or SingleCellExperiment objects, the column name of rowData(object) to be used to identify features instead of rownames(object).

Value

A string vector, returns the names of all genes of the object for the requested assay.

Author(s)

Daniel Bunis

See Also

isGene for returning all genes in an object

gene for obtaining the expression data of genes

Examples

example(importDittoBulk, echo = FALSE)
getGenes(object = myRNA, assay = "counts")

# To see all genes of an object for the default assay that dittoSeq would use
# leave out the assay input
getGenes(myRNA)

# Seurat
# pbmc <- Seurat::pbmc_small
# # To see all genes of an object of a particular assay
# getGenes(pbmc, assay = "RNA")

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