getSDFwithName {customCMPdb}

R Documentation

Get Compound Structures from Four Sources

Description

This function could be used to get SDFset of compounds in CMAP2, LINCS, DrugAge or DrugBank databases. The cid of the SDFset are compound names instead of their internal IDs.

Usage

getSDFwithName(source = "LINCS")

Arguments

source

character(1), one of "CMAP2", "LINCS", "DrugBank", "DrugAge"

Value

SDFset object of compounds in the source database, the cid of the SDFset are compound names.

See Also

SDFset

Examples

da_sdf <- getSDFwithName(source="DrugAge")

---