omnipath_ptm {cosmosR} | R Documentation

## OmniPath PTMs

### Description

Collection of annotated enzyme-substrate post translational modifications obtained from OmniPath.

### Usage

    data(omnipath_ptm)

### Format

An object of class “`data.frame`” with 39201 rows (PTMs) and 12 variables:

`enzyme`
`substrate`
`enzyme_genesymbol`
`substrate_genesymbol`
`residue_type`
`residue_offset`
`modification`
`sources`
`references`
`curation_effort`
`n_references`
`n_resources`

### Source

Default resource collection of OmniPath: http://omnipathdb.org/ptms?fields=sources,references&genesymbols=1, version of Feb 5th, 2020.

### References

Turei, D., Korcsmaros, T. and Saez-Rodriguesz, J. (2016) Nature Methods. 13(12), 966–967.

### Examples

    data(omnipath_ptm)

[Package cosmosR version 1.2.0 Index]