gmt_to_dataframe {cosmosR} | R Documentation

## Convert gmt file to data frame

### Description

This function is designed to convert a gmt file (gene set file from MSigDB) into a two column data frame where the first column corresponds to omic features (genes) and the second column to associated terms (pathway the gene belongs to). One gene can belong to several pathways.

### Usage

    gmt_to_dataframe(gmtfile)

### Arguments

`gmtfile` | a full path name of the gmt file to be converted

### Value

a two column data frame where the first column corresponds to omic features and the second column to associated terms (pathways).

[Package cosmosR version 1.2.0 Index]