metabolite_to_pubchem {cosmosR} | R Documentation

## Metabolite-PubChem CID Mapping

### Description

Mapping between metabolite names and PubChem CIDs obtained from the recon3D metabolic model. Combined table version from the recon3D matlab object.

### Usage

    data(metabolite_to_pubchem)

### Format

An object of class “`data.frame`” with 1131 rows (metabolites) and two variables:

`name`

  Metabolite name synonym

`pubchem`

  Pubchem CID

### Source

https://www.vmh.life/#downloadview, downloaded on Feb 19th, 2018.

### References

Brunk, E. et al. (2018) Nature Biotechnology. 36(3), 272–281.

### Examples

    data(metabolite_to_pubchem)

[Package cosmosR version 1.2.0 Index]