f913b80ac54f01656362683f34b6f5cb *DESCRIPTION
2213bfee4a16d0fe23136e870d61db73 *INDEX
96e62d7b29aec8bb276db087a023e018 *LICENSE
0cf847ebffffcd34cab18bc1f24d5a76 *Meta/Rd.rds
2bcca7ed99be0d08943f84472aa53325 *Meta/data.rds
8503e676975364d771072956cdbca633 *Meta/features.rds
6ed5fa6287dcd3348a1af5ba2ccf113a *Meta/hsearch.rds
901a36e066b6d8a9e700db4888eaa056 *Meta/links.rds
900f7e2ede163f4b0704ce74dbf05a48 *Meta/nsInfo.rds
49c6884983c702054fe6af989f1fe359 *Meta/package.rds
c0f2bb775d6ead81cc592307270788f0 *Meta/vignette.rds
a412311729df11cd527b02eaa09ab443 *NAMESPACE
0d271b8fb88aab96e2a07acb952167c6 *NEWS.md
d6c68f1fe41ced6e98a766a3757313da *R/compartmap
d700c7541fe0ae39d89a04b16d2df4f6 *R/compartmap.rdb
9db3db68427aa2428dbd82cf58b2185c *R/compartmap.rdx
55dae8471d35c19d88097f95f661f077 *data/datalist
b8da7a63757867cf1dce6e6f5c1d4976 *data/hg19.gr.rda
9a238aa4a844609042b1e7d2b2dd20ee *data/hg38.gr.rda
994ad6b6ab5b405268a39b33e0a176f2 *data/k562_scatac_chr14.rda
276d55057865e4a8e8d8e9915b69838d *data/k562_scrna_chr14.rda
fbcad2248bcc3288f2c561ff90f69aa4 *data/k562_scrna_raw.rda
c7fedbe494681bd662004fe0e21bbf3d *data/mm10.gr.rda
2856a811e4f4236e927ee5a6d87ad2f5 *data/mm9.gr.rda
2286eedf699151fe02411d1641d4c184 *data/ss3_umi_sce.rda
c22f0545c2af314872e2d9914c9a82ea *doc/compartmap_vignette.R
fbb392091123e9d8677b6a0540e69f2b *doc/compartmap_vignette.Rmd
03cf2298ade2e9a9fbd33e46342a6bf9 *doc/compartmap_vignette.html
b0fae1067dd033fabb337f7bd33e1210 *doc/index.html
986acb95273fa632e02b8ad3464620d7 *extdata/grch38_91_hsapiens.gtf.gz
2c1335a9f88a72aee81310074ccc9382 *extdata/k562_scrna_chr14_cell1.bw
c1c740eff09c64ef6c6ea335ec34f889 *extdata/k562_scrna_chr14_cell2.bw
cbf7c63d202b8f02abbeeede01986500 *help/AnIndex
0f0e4e8c981f661c6288f493910bfe0b *help/agrestiCoullCI.html
38c42002c9f1c6b7d4d45b0f34bcb20f *help/aliases.rds
85c098093a7d94fdf8bedbe1c4e4cd0d *help/bootstrapCompartments.html
3708ef985c7ba5e23330e03762bf512f *help/checkAssayType.html
00d34b4825089b895a765be8c4e4b4dc *help/compartmap.rdb
1060216ce63d0ad7d2485e1bb5a8c07f *help/compartmap.rdx
3dff87c58e3be588f4ece98b5941c8ce *help/condenseRE.html
fa15e6fc4624699ded1273f3a82e918b *help/condenseSE.html
6eed063080711f02135ad09d951d6ec2 *help/dot-n_approx.html
9e001060cb9d8f3a4277361b3f759c6f *help/dot-p_approx.html
81640502234080fc001c40ebcf6e54b2 *help/dot-z.html
40c70f69dbbbee5b2d57b602a5cc7bc1 *help/estRMT.html
479e8418635e37d1e21ca721cf104ebc *help/extractOpenClosed.html
ec7e40ef4679fc745cbb247af4602f81 *help/fexpit.html
bf3930e80a95cd86153b25716114a204 *help/figures/compartmap_logo.png
8ff68a6a7d09c92d615890e33da8b020 *help/filterCompartments.html
44fcc07c5ac11cee76b4c608d17882c8 *help/fisherZ.html
55b34c18e5f1b01b5b56635aae56cb6b *help/fixCompartments.html
fe1b8c92a89c0f877d184993915b3108 *help/flogit.html
6a8c59c63926cd741f5580d988ef9e28 *help/getABSignal.html
2193f74c65137135ffa6704c3aa6cfe3 *help/getATACABsignal.html
24efe19cf157bba7cc2e16eb26d3a602 *help/getAssayNames.html
08ac10a907d524c688b598dd2b19ce33 *help/getBinMatrix.html
b2deb10b79164794a0fa15013f9ceed6 *help/getChrs.html
a5b53a4c39b5f293025b86a1231d3b54 *help/getCorMatrix.html
75dc9c0dd0ad2caaa105c35bf452c8dc *help/getDenoisedCorMatrix.html
75dc9c0dd0ad2caaa105c35bf452c8dc *help/getDenoisedMatrix.html
874e8f4b0f1578df948de6107b65d4c1 *help/getDomainInflections.html
cdc668fb386a014a5bfda94bd730cfc2 *help/getGlobalMeans.html
9acf6f359526f2f6bb1a93b6cfb65fb8 *help/getMatrixBlocks.html
2193f74c65137135ffa6704c3aa6cfe3 *help/getRNAABsignal.html
fec026f144c99507f97472447519e317 *help/getSVD.html
8427f889a92fc7d6ebf185c26486b1a4 *help/getSeqLengths.html
11d674d9a6d0df3c6361d8a251d1412b *help/getShrinkageTargets.html
ad4b1869c7f5987ba6b15775ea5542c6 *help/hdf5TFIDF.html
2933a0e0dfb120fb56114daf66b3a339 *help/hg19.gr.html
c68427422aadb7fe871ee40a734c854d *help/hg38.gr.html
669b5a260f74c3764aeafa130e0004d3 *help/ifisherZ.html
cf1e0a3598c91227c8fe366abf7754df *help/importBigWig.html
795c1ffd252568ad75917d2700ff4ee5 *help/k562_scatac_chr14.html
79d738396b66b650b8d6b2a71b16ccec *help/k562_scrna_chr14.html
590719a488969788953dd6612156ef33 *help/k562_scrna_se_chr14.html
360d33a0a8530763b111895ee2a99e3e *help/meanSmoother.html
8dc07f22db8f424c3beeb52bfbbd8f23 *help/mm10.gr.html
96a7c0c308662edc1db7386fcc00e02e *help/mm9.gr.html
5d2eca3ff494f131f8bcc1b7c1165e4d *help/paths.rds
4c962716a25992f4215ce15ee8500f2f *help/plotAB.html
424ec8296c697eda3c0895153a7ad969 *help/plotCorMatrix.html
eaf4e5a179596f196f073359db86fb04 *help/precomputeBootstrapMeans.html
8d8687a1409a92dddf6f467b2ed54d54 *help/removeEmptyBoots.html
3755850d2a916ec7ff665c5116f3411f *help/scCompartments.html
9e45ae261b765525a621cdca846c1a82 *help/shrinkBins.html
bb4f2ad11cbfaf7e72a1364aaf2d28a9 *help/sparseToDenseMatrix.html
d3e53167a1f1f81d1d9328439c573346 *help/ss3_umi_sce.html
afbd11d24c41b54b8c277c329061ccdc *help/summarizeBootstraps.html
2ce9404fc321788338153c383fb7de8f *help/transformTFIDF.html
c257663a2bdc4234bebf2805c3636014 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
f85b17346113593171d7c6dedb94d5d9 *html/agrestiCoullCI.html
98adbd6bcdf84965200a093672c1cd68 *html/bootstrapCompartments.html
648d4e34ea162ce05d8da43bed9d1c70 *html/checkAssayType.html
f9c05ac958c5d849a5c8c96e95c081c0 *html/condenseRE.html
998b3cd4355827f194d5262882475a61 *html/condenseSE.html
75470e82bd4c12bcca2b362f36a8ad46 *html/dot-n_approx.html
2ffe80868142bcec673b7c550a8ac0fa *html/dot-p_approx.html
5a61a85d23afc3b044a1deeb4561d59c *html/dot-z.html
3ba764fe130b141aff66702a2985a4ea *html/estRMT.html
71fc1311a2cf9e29523cac81350e3154 *html/extractOpenClosed.html
4bcb3199117f44f4ab4fc2411dfd2002 *html/fexpit.html
7bdf99d409dfa89eeab3127c38fa8337 *html/filterCompartments.html
b5a7eeccb73387051f749a807fec6258 *html/fisherZ.html
ead054ce80277b9f27a34e2a88245987 *html/fixCompartments.html
f2d40da36b7d400e2f1fe54d7df229bb *html/flogit.html
fca9cf174ac25dc8009cb7609a8d8bf5 *html/getABSignal.html
0ff9f37319e3496802d8a31d909aaf13 *html/getATACABsignal.html
86a68054b869e3797d7bb0ba49a23a69 *html/getAssayNames.html
97e9935e4b623f18ea82ca055c29925c *html/getBinMatrix.html
a07e0c1110cfeb7a252103c7ae3b8c60 *html/getChrs.html
4eb7e0e800cd46be85a420d4d796927d *html/getCorMatrix.html
38fae0f50989101ff9f63064b811e7b6 *html/getDenoisedMatrix.html
c7bd14a1e46750984eeee4c2a3d6c564 *html/getDomainInflections.html
c63e182da9ef5f5085f6057a8125ccc0 *html/getGlobalMeans.html
091105bed16d42ca8e2b15d03f352751 *html/getMatrixBlocks.html
0506103b1b8f9a8ca91fc103762fb5c2 *html/getSVD.html
ca3620772d97513b25abbbb2cad7b6e1 *html/getSeqLengths.html
c0efb3b20b8c61b1ba5a4581873c9450 *html/getShrinkageTargets.html
ca5114764d1390296f8881439605db08 *html/hdf5TFIDF.html
d0ec5e7abd72abe16eb714a6d957438c *html/hg19.gr.html
25952f9a6b4ee0295e7737fbba5b9336 *html/hg38.gr.html
5f8dec05c12740302a9c032f587ff484 *html/ifisherZ.html
43e4243ee22a60ef71d736bf310ec0dd *html/importBigWig.html
852235620db0775de71496ada76e8121 *html/k562_scatac_chr14.html
14d3bcc80745cafafc786c8f61decee7 *html/k562_scrna_chr14.html
193edfef01ce088c1787b747dd792b0e *html/k562_scrna_se_chr14.html
6f8f1cc643bee5c7cac683d1a1eb2815 *html/meanSmoother.html
aa4451299db1fd72d92541de8309494f *html/mm10.gr.html
993fdd9a815117343aa8095b8a41f7b3 *html/mm9.gr.html
7f2b71be323a58bad56b5fbbbdebc88a *html/plotAB.html
ee6a6008150f888b48f5f72a71693389 *html/plotCorMatrix.html
b7ea97d00133054409231dba9dd080bc *html/precomputeBootstrapMeans.html
b3b37358f1a8063c214bd04d2046c682 *html/removeEmptyBoots.html
97165132ae4e916babaad13e3242f80b *html/scCompartments.html
683f87310de9c3089ce73ac346a075fe *html/shrinkBins.html
8127816aec9384c0697cd4c38d3ede35 *html/sparseToDenseMatrix.html
eacdeb41b09acd8bbb9d41b7b8e4f927 *html/ss3_umi_sce.html
d1b6bd4d15baab6d3f58b6b81204096e *html/summarizeBootstraps.html
2c70458c6d1ee3d39a284d7c1bd439e1 *html/transformTFIDF.html
84959e33770f6fcfa536b0f431004b89 *scripts/create_species_seqlengths_granges.R
