| getCMapConditions {cTRAP} | R Documentation |
Downloads metadata if not available
getCMapConditions( metadata, cellLine = NULL, timepoint = NULL, dosage = NULL, perturbationType = NULL, control = FALSE )
metadata |
Data frame (CMap metadata) or character (respective filepath) |
cellLine |
Character: cell line (if |
timepoint |
Character: timepoint (if |
dosage |
Character: dosage (if |
perturbationType |
Character: type of perturbation (if |
control |
Boolean: show controls for perturbation types? |
List of conditions in CMap datasets
Other functions related with the ranking of CMap perturbations:
as.table.referenceComparison(),
filterCMapMetadata(),
getCMapPerturbationTypes(),
loadCMapData(),
loadCMapZscores(),
parseCMapID(),
plot.perturbationChanges(),
plot.referenceComparison(),
plotTargetingDrugsVSsimilarPerturbations(),
prepareCMapPerturbations(),
print.similarPerturbations(),
rankSimilarPerturbations()
## Not run:
cmapMetadata <- loadCMapData("cmapMetadata.txt", "metadata")
## End(Not run)
getCMapConditions(cmapMetadata)