Class for handling a Mass spectrometry database in SQLite format.

Description

This is the connector class for a MASS SQLite database.

Super classes

biodb::BiodbConnBase -> biodb::BiodbConn -> biodb::SqliteConn -> MassSqliteConn

Methods

Public methods

• MassSqliteConn$clone()

Method clone()

The objects of this class are cloneable with this method.

Usage

MassSqliteConn$clone(deep = FALSE)

Arguments

See Also

Super class SqliteConn.

Examples

# Create an instance with default settings:
mybiodb <- biodb::newInst()

# Get path to LCMS database example file
lcmsdb <- system.file("extdata", "massbank_extract.sqlite", package="biodb")

# Create a connector
conn <- mybiodb$getFactory()$createConn('mass.sqlite', url=lcmsdb)

# Get an entry
e <- conn$getEntry('34.pos.col12.0.78')

# Terminate instance.
mybiodb$terminate()