biodb-package {biodb} | R Documentation

## biodb: biodb, a library and a development framework for connecting to chemical and biological databases

### Description

The biodb package provides access to standard remote chemical and biological databases (ChEBI, KEGG, HMDB, ...), as well as to in-house local database files (CSV, SQLite), with easy retrieval of entries, access to web services, search of compounds by mass and/or name, and mass spectra matching for LCMS and MSMS. Its architecture as a development framework facilitates the development of new database connectors for local projects or inside separate published packages.

### Details

To get a presentation of the biodb package and get started with it, please see the "biodb" vignette.

    vignette('biodb', package='biodb')

### Author(s)

Maintainer: Pierrick Roger pierrick.roger@cea.fr (ORCID)

Other contributors:

- Alexis Delabrière delabriere@imsb.biol.ethz.ch (ORCID) [contributor]

### See Also

BiodbMain, BiodbConfig, BiodbFactory, BiodbPersistentCache, BiodbDbsInfo, BiodbEntryFields.

[Package biodb version 1.2.2 Index]