| ps_plaque_16S {benchdamic} | R Documentation |
A demonstrative purpose dataset containing microbial abundances
for a total of 88 OTUs. The 60 Gingival Plaque paired samples belong to the
Human Microbiome Project. This particular subset contains 30 Supragingival
and 30 Subgingival Plaque samples from the SEX = "Male",
RUN_CENTER = "WUCG", and VISITNO = "1" samples. It is possible
to obtain the same dataset after basic filters (remove taxa with zero counts)
and collapsing the counts to the genus level; HMP16SData Bioconductor
package was used to download the data.
data(ps_plaque_16S)
An object of class phyloseq