prepareAnnotations {bambu}

R Documentation

prepare annotations from txdb object or gtf file

Description

Function to prepare tables and genomic ranges for transript reconstruction using a txdb object

Usage

prepareAnnotations(x)

Arguments

x	A TxDb object or a gtf file

Value

A GRangesList object

Examples

gtf.file <- system.file("extdata",
    "Homo_sapiens.GRCh38.91_chr9_1_1000000.gtf",
    package = "bambu"
)
prepareAnnotations(x = gtf.file)

---