9abb316c2657a39e9cbe31ab122b8113 *DESCRIPTION
ec16152509c981690ef24b8f1489e42c *INDEX
1e15b75aaae2b7ca5c6b0a56050baea8 *Meta/Rd.rds
131ab02359063cb90c7089c3bd032230 *Meta/data.rds
8503e676975364d771072956cdbca633 *Meta/features.rds
a51532de7e04e21b2f61a4d49b30773f *Meta/hsearch.rds
2b482b5ab43ea19456fe66a66a543142 *Meta/links.rds
5b1b96bd4a483d56d0bf9a154b45a89f *Meta/nsInfo.rds
62932d920293f1877b95c50a63d2a306 *Meta/package.rds
4754c3e5cece56dc7f270774b4ae158d *Meta/vignette.rds
aae06e60e6dc746d889b887cda628302 *NAMESPACE
c65cf0fd2768309df49e1428d7af9db3 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/ballgown
653be39fde2b5fd160286d21b5344ad1 *R/ballgown.rdb
39facfd79bf41f1ab70317f47e3516ac *R/ballgown.rdx
fdc4adf6ef6200a347ad51956acada04 *data/bg.rda
50364de0e42ed550ab758567a503d0a3 *doc/ballgown.R
6cafd3ebcc75dc8a0920b0d210019de6 *doc/ballgown.Rmd
8be4f82ea5d6b467402596bc98693271 *doc/ballgown.html
aac9ed70405afb6b8a8e926434dbf0da *doc/index.html
622fa378b59bd017d31803657a09cce4 *extdata/annot.gtf.gz
10fd676ba636429f9515f623ebb1129c *extdata/hg19_genes_small.gtf.gz
9712175d9216638edd5563dc00560e49 *extdata/sample01/e2t.ctab
b0030b9e0d835f28e036b639726cdef7 *extdata/sample01/e_data.ctab
63afcb680be0aaecc7fff6c355832226 *extdata/sample01/i2t.ctab
fa4e74090f17f6f811579ced8e52d647 *extdata/sample01/i_data.ctab
7310dd98e10ceed48e2d5367230105fa *extdata/sample01/t_data.ctab
9712175d9216638edd5563dc00560e49 *extdata/sample02/e2t.ctab
fa659af6c76684c252595fc9f2ad2ec2 *extdata/sample02/e_data.ctab
63afcb680be0aaecc7fff6c355832226 *extdata/sample02/i2t.ctab
18f4d45408b0410e5b0bf99d79f3c572 *extdata/sample02/i_data.ctab
10dd7d5ec48e102ac1475fb3cb135d33 *extdata/sample02/t_data.ctab
9712175d9216638edd5563dc00560e49 *extdata/sample03/e2t.ctab
e565208a69f2ecd85a1aaf2056bebdc7 *extdata/sample03/e_data.ctab
63afcb680be0aaecc7fff6c355832226 *extdata/sample03/i2t.ctab
4e0e81a15ba6f8a425aef925fccaf4f3 *extdata/sample03/i_data.ctab
4ee176b65afbab163f0e397afb6b9a70 *extdata/sample03/t_data.ctab
9712175d9216638edd5563dc00560e49 *extdata/sample04/e2t.ctab
b5ac5a97c30d2ad2bfb93efed28a454c *extdata/sample04/e_data.ctab
63afcb680be0aaecc7fff6c355832226 *extdata/sample04/i2t.ctab
54365133f4f043d68c1482c312f160b8 *extdata/sample04/i_data.ctab
60d7e157baed349f229eddbe0499310b *extdata/sample04/t_data.ctab
9712175d9216638edd5563dc00560e49 *extdata/sample05/e2t.ctab
5c89d35348435d41401536a9d025880d *extdata/sample05/e_data.ctab
63afcb680be0aaecc7fff6c355832226 *extdata/sample05/i2t.ctab
a37a2fa552db03f6db728b484e708c13 *extdata/sample05/i_data.ctab
a4cfb5ffe4d907a6faad6935c5c51335 *extdata/sample05/t_data.ctab
9712175d9216638edd5563dc00560e49 *extdata/sample06/e2t.ctab
bd86699c8ebbb25d811ff168aa9589cf *extdata/sample06/e_data.ctab
63afcb680be0aaecc7fff6c355832226 *extdata/sample06/i2t.ctab
b916772be983d7f1936933b1325aaff7 *extdata/sample06/i_data.ctab
c5112b9da2a11eb47c22ce869c5c577b *extdata/sample06/t_data.ctab
9712175d9216638edd5563dc00560e49 *extdata/sample07/e2t.ctab
58d8458a2de9c9310e978eefa83e5d26 *extdata/sample07/e_data.ctab
63afcb680be0aaecc7fff6c355832226 *extdata/sample07/i2t.ctab
4cadb06d0ad4e97f4afd6e3ba38a6b8c *extdata/sample07/i_data.ctab
d06dcf2dc5ace75162fcf572ebf38237 *extdata/sample07/t_data.ctab
9712175d9216638edd5563dc00560e49 *extdata/sample08/e2t.ctab
3707f6490f9c582654d9f682dc089586 *extdata/sample08/e_data.ctab
63afcb680be0aaecc7fff6c355832226 *extdata/sample08/i2t.ctab
67db59fe3081385a80cf46c0ae30b1e4 *extdata/sample08/i_data.ctab
e9f68ce65b6b51bbdfa329bbcd593713 *extdata/sample08/t_data.ctab
9712175d9216638edd5563dc00560e49 *extdata/sample09/e2t.ctab
13ddfe57d05065355105307cfbad8deb *extdata/sample09/e_data.ctab
63afcb680be0aaecc7fff6c355832226 *extdata/sample09/i2t.ctab
9a6f17b8c69d806f2dc1bcc4d0a7e48e *extdata/sample09/i_data.ctab
d5a1d478ca26faef1eea955d85d88030 *extdata/sample09/t_data.ctab
9712175d9216638edd5563dc00560e49 *extdata/sample10/e2t.ctab
f9f67a721bc55790662e237e483c7411 *extdata/sample10/e_data.ctab
63afcb680be0aaecc7fff6c355832226 *extdata/sample10/i2t.ctab
e261de726c53d0e9b5257c324c5f54d6 *extdata/sample10/i_data.ctab
cbf8240e1691fdbfc34ceba545a277bf *extdata/sample10/t_data.ctab
9712175d9216638edd5563dc00560e49 *extdata/sample11/e2t.ctab
71c0002b297b3e475fde5458027df7b4 *extdata/sample11/e_data.ctab
63afcb680be0aaecc7fff6c355832226 *extdata/sample11/i2t.ctab
a8dabb84c1dc76efebf50c830c7f4c9d *extdata/sample11/i_data.ctab
a9ebafba6774907b0964eefa91668bf7 *extdata/sample11/t_data.ctab
9712175d9216638edd5563dc00560e49 *extdata/sample12/e2t.ctab
d5f54ef0b74fc0edec98a82dc83735b6 *extdata/sample12/e_data.ctab
63afcb680be0aaecc7fff6c355832226 *extdata/sample12/i2t.ctab
04050031a1f304245c476804ddb54fe9 *extdata/sample12/i_data.ctab
111c8e9db58e26bd3848eddb082c39d3 *extdata/sample12/t_data.ctab
9712175d9216638edd5563dc00560e49 *extdata/sample13/e2t.ctab
027c904f9a659d93a482f8b61715e4f7 *extdata/sample13/e_data.ctab
63afcb680be0aaecc7fff6c355832226 *extdata/sample13/i2t.ctab
1289d33f9adbfc0b22ee844b78705187 *extdata/sample13/i_data.ctab
5f29fbd76326281ecef7299529e2e2c7 *extdata/sample13/t_data.ctab
9712175d9216638edd5563dc00560e49 *extdata/sample14/e2t.ctab
f5924b89410634ef6a0a339e3538833a *extdata/sample14/e_data.ctab
63afcb680be0aaecc7fff6c355832226 *extdata/sample14/i2t.ctab
dfd8beda181392651e3008090de94797 *extdata/sample14/i_data.ctab
e8a1177afd72f2b53d59866627c21285 *extdata/sample14/t_data.ctab
9712175d9216638edd5563dc00560e49 *extdata/sample15/e2t.ctab
61e69e7a7f079ff09849108519359eb6 *extdata/sample15/e_data.ctab
63afcb680be0aaecc7fff6c355832226 *extdata/sample15/i2t.ctab
6b197ecc03c3dda35730b0b7c70eef7d *extdata/sample15/i_data.ctab
9150bb647c090bb55de60e34fb2cc8f7 *extdata/sample15/t_data.ctab
9712175d9216638edd5563dc00560e49 *extdata/sample16/e2t.ctab
79410e23d94f03fa07ac00e137852253 *extdata/sample16/e_data.ctab
63afcb680be0aaecc7fff6c355832226 *extdata/sample16/i2t.ctab
eadaaee7bc4778cba79cd67f34a58719 *extdata/sample16/i_data.ctab
a18774c9229fd8119b9d74a7efc543f9 *extdata/sample16/t_data.ctab
9712175d9216638edd5563dc00560e49 *extdata/sample17/e2t.ctab
92a858a135d9dac9eb54718410a1e982 *extdata/sample17/e_data.ctab
63afcb680be0aaecc7fff6c355832226 *extdata/sample17/i2t.ctab
4862d8ad80d8b5c484f88f3df913461e *extdata/sample17/i_data.ctab
c98ff348558c251853ededb08b5a6185 *extdata/sample17/t_data.ctab
9712175d9216638edd5563dc00560e49 *extdata/sample18/e2t.ctab
2cf81d2dcb51711c8966da684399dda0 *extdata/sample18/e_data.ctab
63afcb680be0aaecc7fff6c355832226 *extdata/sample18/i2t.ctab
d9078340ce6d07253dee3997934e3ffe *extdata/sample18/i_data.ctab
e55364bb807ddaa218a31685250a9fc8 *extdata/sample18/t_data.ctab
9712175d9216638edd5563dc00560e49 *extdata/sample19/e2t.ctab
aba97b698279a2a6cbc4fa1ec26692ee *extdata/sample19/e_data.ctab
63afcb680be0aaecc7fff6c355832226 *extdata/sample19/i2t.ctab
578f2fd5be5c7ace44c725f9ccb6f0d0 *extdata/sample19/i_data.ctab
c5a208ca236b3dea8a513f316c7485ce *extdata/sample19/t_data.ctab
9712175d9216638edd5563dc00560e49 *extdata/sample20/e2t.ctab
6e2e4beeef77538b8b28148ad262cd88 *extdata/sample20/e_data.ctab
63afcb680be0aaecc7fff6c355832226 *extdata/sample20/i2t.ctab
64271ce0582afe692d9ea149c577efdb *extdata/sample20/i_data.ctab
eb41b9487bea5ed79725a869892e2eb5 *extdata/sample20/t_data.ctab
a48796f1738e4ab5f643993ddebdb3e9 *extdata/tiny.genes.results.gz
c2be2c44533cf6ab58cc1e6dd82c99f8 *extdata/tiny.isoforms.results.gz
5c6c82cd51f78e83547d6ef0bea5f9f3 *extdata/tiny2.genes.results.gz
cdf008df213762f620bc5d551b918060 *extdata/tiny2.isoforms.results.gz
191712a21ff66e2387278203795a5486 *help/AnIndex
f491afda0af88da8b44b54431f03643a *help/Ballgown.html
5864cb795740e5a4f6820493ea518744 *help/aliases.rds
b7b751394e8e3c4b9051e327e318eae2 *help/annotate_assembly.html
483e4db7228df00fa1a7c2805f138104 *help/ballgown-class.html
f491afda0af88da8b44b54431f03643a *help/ballgown-constructor.html
6362e94ecabbacc8dd360362a2875533 *help/ballgown-package.html
8ff577d66c216b0d953d7c4b8be5e3b6 *help/ballgown.rdb
6eb7fe702651c7163125cf7bd045e988 *help/ballgown.rdx
6362e94ecabbacc8dd360362a2875533 *help/ballgownp.html
763b4cad072ce893d438f3298b69ca32 *help/ballgownrsem.html
187156282828372625593eafc4cd32db *help/bg.html
50214429ed451ae40658a9188031784c *help/checkAssembledTx.html
1c624e1ada8a7418126c2259421b07c0 *help/clusterTranscripts.html
933451e31191a5828a044c6b1a4f8353 *help/collapseTranscripts.html
d4272dbd10ad296aac0e13791123fd21 *help/contains.html
02da2535a25a503878d753f46d34449e *help/dirs+2Cballgown-method.html
02da2535a25a503878d753f46d34449e *help/dirs.html
eb85ea69645903bf48ec04b607d7504f *help/eexpr+2Cballgown-method.html
eb85ea69645903bf48ec04b607d7504f *help/eexpr.html
33eff59c3c659517e502a2e0d010a3ca *help/expr+2Cballgown-method.html
5b4c0e04e03976388cdd6d764281e5b1 *help/expr+3C-+2Cballgown-method.html
5b4c0e04e03976388cdd6d764281e5b1 *help/expr+3C-.html
5b4c0e04e03976388cdd6d764281e5b1 *help/expr-replace.html
33eff59c3c659517e502a2e0d010a3ca *help/expr.html
0d53a024a6fa96cb356d6d86ce31f98c *help/exprfilter.html
4881708cf83796a25f635342e347d303 *help/geneIDs+2Cballgown-method.html
4881708cf83796a25f635342e347d303 *help/geneIDs.html
ba628b4013152513e561d8b4b978f428 *help/geneNames+2Cballgown-method.html
ba628b4013152513e561d8b4b978f428 *help/geneNames.html
c2b14afd6cb8983f83128e309f8704bb *help/getAttributeField.html
a552d1200d8f015ab09fc8f76863e571 *help/getGenes.html
07a1eaffece92a8a90136b7a14338652 *help/gexpr+2Cballgown-method.html
07a1eaffece92a8a90136b7a14338652 *help/gexpr.html
409fb18e03d49cfd5b886694d1731d3a *help/gffRead.html
f6928050a345c49e8ae564eacd8f72c4 *help/gffReadGR.html
5c42eefc71210e1a0b5cb6582ea312c7 *help/iexpr+2Cballgown-method.html
5c42eefc71210e1a0b5cb6582ea312c7 *help/iexpr.html
f97bd8b2feb45ec8453581a430fdd213 *help/indexes+2Cballgown-method.html
5d69f26f3b9bc2583ca78fe19d9eded6 *help/indexes+3C-+2Cballgown-method.html
5d69f26f3b9bc2583ca78fe19d9eded6 *help/indexes+3C-.html
5d69f26f3b9bc2583ca78fe19d9eded6 *help/indexes-replace.html
f97bd8b2feb45ec8453581a430fdd213 *help/indexes.html
de9d2a4dd2c8663e3532d39905e7bc52 *help/last.html
3be24fec05d4b88134831cbf31faf048 *help/mergedDate+2Cballgown-method.html
3be24fec05d4b88134831cbf31faf048 *help/mergedDate.html
76930dfa25f8e4752a21799d6b2d3332 *help/pData+2Cballgown-method.html
fbbcfe522d642bdd2f2dffa68605d20f *help/pData+3C-+2Cballgown+2CANY-method.html
fbbcfe522d642bdd2f2dffa68605d20f *help/pData+3C-.html
fbbcfe522d642bdd2f2dffa68605d20f *help/pData-replace.html
76930dfa25f8e4752a21799d6b2d3332 *help/pData.html
aac7dfd382b17083bd02ab2e06db9f78 *help/paths.rds
42307f1af3c0901a22989941cf6216d5 *help/pctOverlap.html
2fa7fae7ea17e6fc3da26a84d6096284 *help/plotLatentTranscripts.html
e903e9d0b39f5275bc04a125f9040b5f *help/plotMeans.html
5d741d545c98ed2e47ad8051cfe0269c *help/plotTranscripts.html
92ff8d4fe264208c6c63f20de7d12d61 *help/sampleNames+2Cballgown-method.html
92ff8d4fe264208c6c63f20de7d12d61 *help/sampleNames.html
7475ea309ad8a686fe7bd69e6580b8e1 *help/seqnames+2Cballgown-method.html
7475ea309ad8a686fe7bd69e6580b8e1 *help/seqnames.html
37835dac4f8f9343fa3f5b16899c1c3c *help/stattest.html
87b651848fe7f3cd4c321e915ff7aa70 *help/structure+2Cballgown-method.html
87b651848fe7f3cd4c321e915ff7aa70 *help/structure.html
7358b31eb22aeed83ed940793fb01690 *help/subset+2Cballgown-method.html
7358b31eb22aeed83ed940793fb01690 *help/subset.html
2eeea0524be8af8fd3edb66680b6d215 *help/tGene.html
4b0eec7472015267f9779eb9f5990639 *help/texpr+2Cballgown-method.html
4b0eec7472015267f9779eb9f5990639 *help/texpr.html
16a207c1fa99479797e93adb93ebc12d *help/transcriptIDs+2Cballgown-method.html
16a207c1fa99479797e93adb93ebc12d *help/transcriptIDs.html
19adaa025a4b327252ff101f96a690b7 *help/transcriptNames+2Cballgown-method.html
19adaa025a4b327252ff101f96a690b7 *help/transcriptNames.html
ff35b2bc5f21a67230e3e928db116f46 *help/writeFiles.html
38fa24f27765c3c9e7ec75e8a2b16f70 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
83667560d2bfb0229c1d2f0a97e125e4 *html/annotate_assembly.html
e40cf0c797eb545c5caee9795f50f089 *html/ballgown-class.html
38ac0ddd09db34445b425dbdbaf0a084 *html/ballgown-constructor.html
959d4a2445c9ae81f3d43ca7e89739ce *html/ballgown-package.html
9495f6dace0c2e71443d4771154f5192 *html/ballgownrsem.html
4ac434c7b795aa55f96294e30e998997 *html/bg.html
671716f700d0c7850bbf6b4f00749213 *html/checkAssembledTx.html
f47a9bf8f3aa4cbb3eb17e3032ac4aeb *html/clusterTranscripts.html
b387a7e7ff4246396440757dd349b6c0 *html/collapseTranscripts.html
28dfe86355ed0544f4ae3b61eb9378e7 *html/contains.html
9b7acfdf4764d75f2cd2663aabe2014d *html/dirs.html
fdbb2abeb35b3c8bdfcac420e4a18b16 *html/eexpr.html
768c6a4abb2ef371b16fb5276bd78a05 *html/expr-replace.html
750372fa5920baadaee924c5ea498970 *html/expr.html
6f060cdc4a76e75e5ae1946e9dad6e14 *html/exprfilter.html
9cf0af1a97cfc3b21298bd5b642a296c *html/geneIDs.html
b570b5b9f9775ba4cd7cf82913748d00 *html/geneNames.html
34c514753ee6b7096731b4c8bdf6bf23 *html/getAttributeField.html
c43aaeae1ed94ee4d0c65b32fd34000e *html/getGenes.html
e7eb85c9ef4888bb2405fa7d92f09855 *html/gexpr.html
aa373f86c54ff2af851eda9c4ae2d1b4 *html/gffRead.html
e4adb7eabba7761e99a9d4c60a0ee774 *html/gffReadGR.html
a893bf8fbbc69532ea4e3c6f47ec1d2c *html/iexpr.html
0d10b844cddf104f1bd1adf0151536b4 *html/indexes-replace.html
6ae781dbd4fc2ccd02b94840a5cb8e95 *html/indexes.html
c90d40a7e346920f28b90a3610b624d2 *html/last.html
8da4435f1897dc897ea269cb8a5fc6a4 *html/mergedDate.html
d7164799cc462c07741af289980f4c36 *html/pData-replace.html
9099e1550997f69f8c796824dff430fb *html/pData.html
201f99dfe4290572d6ed36eaa8c22fb7 *html/pctOverlap.html
cbc61d73314bcbfaa17d4218dc34b19f *html/plotLatentTranscripts.html
ee894b92642d7909a4b6b72b9b1bd5e1 *html/plotMeans.html
fbb80605a7b1588603407f9860ba7699 *html/plotTranscripts.html
0ad35b4a294b83200e109c7924b5dbd8 *html/sampleNames.html
7722baff27d6a8c09843d1a9de729977 *html/seqnames.html
efc72709a201f81d388b72537d349560 *html/stattest.html
067429372998af9293fcc2f9391678db *html/structure.html
5083d6bafc1d9b3d9f79bfddf6a2dff0 *html/subset.html
6a559d4e696b683ba71dc4a91ca6586d *html/tGene.html
4cc984bf21df710cef71a449d8efbb0d *html/texpr.html
2b38dd47a7b3919451b84433966545cb *html/transcriptIDs.html
31a495f034bf97e19854316f424ed5a7 *html/transcriptNames.html
4576fb2eaaed5fad79bfc296a0015d5c *html/writeFiles.html
