plot_features {autonomics}

R Documentation

Plot features

Description

Plot features

Usage

plot_features(
  object,
  geom,
  subgroup,
  x = !!enquo(subgroup),
  fill = !!enquo(subgroup),
  color = !!enquo(subgroup),
  ...,
  fixed = list(na.rm = TRUE),
  theme = list(axis.text.x = element_blank(), axis.title.x = element_blank(),
    axis.ticks.x = element_blank())
)

plot_feature_profiles(...)

Arguments

object	SummarizedExperiment
geom	geom_point, geom_boxplot, etc.
subgroup	subgroup svar
x	svar mapped to x
fill	svar mapped to fill
color	svar mapped to color
...	mapped aesthetics
fixed	fixed aesthetics
theme	ggplot theme specifications

Value

ggplot object

Examples

require(magrittr)
file <- download_data('halama18.metabolon.xlsx')
object <- read_metabolon(file, pca=TRUE, plot = FALSE)
idx <- order(abs(fdata(object)$pca1), decreasing=TRUE)[1:9]
object %<>% extract(idx, )
plot_feature_boxplots(object)
plot_subgroup_boxplots(object, subgroup=Group)
plot_feature_profiles( object, subgroup=Group)

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