limma {autonomics}

R Documentation

Get/set limma results

Description

Get/Set limma results

Usage

limma(object)

## S4 method for signature 'SummarizedExperiment'
limma(object)

limma(object) <- value

## S4 replacement method for signature 'SummarizedExperiment,array'
limma(object) <- value

## S4 replacement method for signature 'SummarizedExperiment,'NULL''
limma(object) <- value

Arguments

object	SummarizedExperiment
value	list

Value

limma results (get) or updated object (set)

Examples

file <- download_data('billing16.proteingroups.txt')
inv <- c('EM_E', 'BM_E', 'BM_EM')
object <- read_proteingroups(
           file, invert_subgroups=inv, fit='limma', plot=FALSE)
dim(limma(object))
dim(limma(object[1:5, ]))

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