explore_transformations {autonomics}

R Documentation

Explore transformations

Description

Explore transformations

Usage

explore_transformations(
  object,
  subgroup = subgroup,
  transformations = c("quantnorm", "zscore", "invnorm"),
  method = "pca",
  xdim = 1,
  ydim = 2,
  ...
)

Arguments

object	SummarizedExperiment
subgroup	subgroup (sym)
transformations	vector
method	'pca', 'pls', 'sma', or 'lda'
xdim	number (default 1)
ydim	number (default 2)
...	passed to plot_data

Value

grid object

Examples

file <- download_data('billing16.proteingroups.txt')
invert <- c('EM_E', 'EM_BM', 'BM_E')
object <- read_proteingroups(file, invert_subgroups = invert, plot=FALSE)
explore_transformations(object)

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