download_gtf {autonomics}

R Documentation

Download GTF file

Description

Download GTF file with feature annotations

Usage

download_gtf(
  organism,
  release = 100,
  gtffile = sprintf("%s/gtf/%s", rappdirs::user_cache_dir(appname = "autonomics"),
    basename(make_gtf_url(organism, release) %>% substr(1, nchar(.) - 3)))
)

Arguments

organism	'Homo sapiens', 'Mus musculus' or 'Rattus norvegicus'
release	GTF release (number)
gtffile	string: path to local GTF file

Value

gtffile path

Examples

organism <- 'Homo sapiens'
# download_gtf(organism)

---