download_data {autonomics}

R Documentation

Download autonomics example data

Description

Download autonomics example data

Usage

download_data(
  filename,
  url = paste0("https://bitbucket.org/graumannlabtools/autonomics/downloads/",
    filename),
  verbose = TRUE
)

Arguments

filename	file name
url	web url Billing 2016: stemcell comparison: E, EM, BM 'billing16.bam.zip' 'billing16.rnacounts.txt' 'billing16.somascan.adat' 'billing16.proteingroups.txt' Atkin 2018: hypoglycemia: t0, t1, t2, t3 'atkin18.somascan.adat' 'atkin18.metbolon.xlsx' Halama 2018: glutaminase inhibition: 4 conc, 4 timepoints 'halama18.metabolon.xlsx' Billing 2019: stemcell differentiation: E00, E01, E02, E05, EM15, EM30, M00 'billing19.rnacounts.txt' 'billing19.proteingroups.txt' 'billing19.phosphosites.txt' Fukuda 2020: zebrafish development: X30dpt, Adult 'fukuda20.proteingroups.txt'
verbose	TRUE / FALSE

Value

local file path

Examples

# atkin18 - hypoglycemia - pubmed 30525282
    download_data('atkin18.somascan.adat')          # somascan  intensities
    download_data('atkin18.metabolon.xlsx')         # metabolon intensities

# billing16 - stemcell characterization - pubmed 26857143
    download_data('billing16.proteingroups.txt')  # proteingroup ratios
    download_data('billing16.somascan.adat')      # somascan  intensities
    download_data('billing16.rnacounts.txt')      # rnaseq    counts
    download_data('billing16.bam.zip')            # rnaseq    alignments

# billing19 - stemcell differentiation - pubmed 31332097
    # download_data('billing19.proteingroups.txt')    # proteingroup ratios
    # download_data('billing19.phosphosites.txt')     # phosphosite  ratios
    # download_data('billing19.rnacounts.txt')        # rnaseq       counts

# fukuda20 - heart regeneration - pubmed PXD016235
    download_data('fukuda20.proteingroups.txt')     # proteingroup LFQ

# halama18 - glutaminase inhibition - pubmed 30525282
    download_data('halama18.metabolon.xlsx')        # metabolon intensities

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