contrastdefs {autonomics}

R Documentation

Get/set contrastdefs

Description

Get/set contrastdefs

Usage

contrastdefs(object)

## S4 method for signature 'SummarizedExperiment'
contrastdefs(object)

contrastdefs(object) <- value

## S4 replacement method for signature 'SummarizedExperiment,list'
contrastdefs(object) <- value

Arguments

object	SummarizedExperiment
value	list

Value

contrastdefs (get) or SummarizedExperiment (set)

Examples

file <- download_data('billing16.proteingroups.txt')
inv <- c('EM_E', 'BM_E', 'BM_EM')
object <- read_proteingroups(
            file, invert_subgroups=inv, fit='limma', plot=FALSE)
contrastdefs(object)

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