assert_is_valid_sumexp {autonomics}

R Documentation

Assert that x is a valid SummarizedExperiment

Description

Assert that x is a valid SummarizedExperiment

Assert that x is a valid SummarizedExperiment

Usage

assert_is_valid_sumexp(x, .xname = get_name_in_parent(x))

assert_is_valid_sumexp(x, .xname = get_name_in_parent(x))

Arguments

x	SummarizedExperiment
.xname	see assertive.base::get_name_in_parent

Value

TRUE or FALSE

TRUE or FALSE

Examples

# VALID
    file <- download_data('halama18.metabolon.xlsx')
    x <- read_metabolon(file, plot = FALSE)
    assert_is_valid_sumexp(x)
# NOT VALID
    rownames(SummarizedExperiment::colData(x)) <- NULL
    # assert_is_valid_sumexp(x)
# VALID
    file <- download_data('halama18.metabolon.xlsx')
    x <- read_metabolon(file, plot = FALSE)
    assert_is_valid_sumexp(x)
# NOT VALID
    rownames(SummarizedExperiment::colData(x)) <- NULL
    # assert_is_valid_sumexp(x)

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