goodAvgQuality {amplican} | R Documentation

## This filters out sequences which have bad average quality readings.

### Description

This filters out sequences which have bad average quality readings.

### Usage

    goodAvgQuality(reads, avg = 30, batch_size = 1e+07)

### Arguments

`reads` | (ShortRead object) Loaded reads from fastq.
`avg` | (numeric) This is what the average score of the quality of sequence should be. For example, if we have a sequence with nucleotides which have quality 70-70-70, the average would be 70. If set the average to 70 or less the sequence will pass. If we set the average to 71 the sequence will not pass.
`batch_size` | (numeric) How many reads to process at a time.

### Value

(boolean) Logical vector with the valid rows as TRUE.

[Package amplican version 1.16.0 Index]