Package: alpine
Title: alpine
Version: 1.20.0
Author: Michael Love, Rafael Irizarry
Maintainer: Michael Love <michaelisaiahlove@gmail.com>
Description: Fragment sequence bias modeling and correction for RNA-seq
        transcript abundance estimation.
License: GPL (>=2)
VignetteBuilder: knitr
Depends: R (>= 3.3)
Imports: Biostrings, IRanges, GenomicRanges, GenomicAlignments,
        Rsamtools, SummarizedExperiment, GenomicFeatures, speedglm,
        splines, graph, RBGL, stringr, stats, methods, graphics,
        GenomeInfoDb, S4Vectors
Suggests: knitr, testthat, markdown, alpineData, rtracklayer,
        ensembldb, BSgenome.Hsapiens.NCBI.GRCh38, RColorBrewer
biocViews: Sequencing, RNASeq, AlternativeSplicing,
        DifferentialSplicing, GeneExpression, Transcription, Coverage,
        BatchEffect, Normalization, Visualization, QualityControl
RoxygenNote: 5.0.1
git_url: https://git.bioconductor.org/packages/alpine
git_branch: RELEASE_3_14
git_last_commit: 9348ef1
git_last_commit_date: 2021-10-26
Date/Publication: 2021-10-26
NeedsCompilation: no
Packaged: 2021-10-27 00:07:19 UTC; biocbuild
Built: R 4.1.1; ; 2021-10-27 09:41:23 UTC; windows
