plotAlevinKneeNbrGenes {alevinQC}

R Documentation

Knee plot of the number of detected genes per cell

Description

Plot the number of detected genes per cell in decreasing order. Only cells contained in the original whitelist are considered.

Usage

plotAlevinKneeNbrGenes(cbTable)

Arguments

cbTable

data.frame (such as the cbTable returned by readAlevinQC) with the number of detected genes per cell.

Value

A ggplot object

Author(s)

Charlotte Soneson

Examples

alevin <- readAlevinQC(system.file("extdata/alevin_example_v0.14",
                                   package = "alevinQC"))
plotAlevinKneeNbrGenes(alevin$cbTable)

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