typedListCheck {XNAString}

R Documentation

Check if all objects are of XNAString class and dictionaries are the same

Description

Check if all objects are of XNAString class and dictionaries are the same

Usage

typedListCheck(object)

Arguments

object

an object of any class. An object must contain 'objects' (list type) slot

Value

logical information. Checks the whole list of objects, TRUE if class of all objects equals 'XNAString' and their dictionaries are the same.

Examples

my_dic <- data.table::data.table(
  type = c(
    rep("base", 3),
    rep("sugar", 2),
    rep("backbone", 3)
  ),
  symbol = c("G", "E", "A", "F", "O", "S", "B", "X")
)
obj2 <- XNAString(
  name = "b",
  base = "GGE",
  sugar = "FFO",
  dictionary = my_dic
)
obj3 <- XNAString(
  name = "b",
  base = c("GGE", "EEE"),
  sugar = c("FFO", "OOO"),
  dictionary = my_dic
)
XNAStringSetObj <- XNAStringSet(objects = list(obj2, obj3))
typedListCheck(XNAStringSetObj)

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