XNAReverseComplement {XNAString}

R Documentation

Reverse complement sequence based on dictionary

Description

Reverse complement sequence based on dictionary

Usage

XNAReverseComplement(obj, ...)

## S4 method for signature 'XNAString'
XNAReverseComplement(obj)

Arguments

obj	XNAString object
...	optional arguments to generic function to support additional methods

Value

string with reverse complement sequence

Examples

my_dic <- data.table::data.table(
  type = c(
    rep("base", 3),
    rep("sugar", 2),
    rep("backbone", 3)
  ),
  symbol = c("G", "E", "A", "F", "O", "S", "B", "X")
)
obj <- XNAString(
  name = "b",
  base = "GGE",
  sugar = "FFO",
  dictionary = my_dic
)
XNAReverseComplement(obj)

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