conjugate5 {XNAString}

R Documentation

Conjugate5 setter/getter method

Description

Getter methods enable extraction of single slots from XNAString and XNAStringSet objects. E.g. name method extracts name slot from XNAString/XNAStringSet object.

Usage

conjugate5(x, ...)

## S4 method for signature 'XNAString'
conjugate5(x)

## S4 method for signature 'XNAStringSet'
conjugate5(x, i = 1)

conjugate5(x, ...) <- value

## S4 replacement method for signature 'XNAString'
conjugate5(x) <- value

## S4 replacement method for signature 'XNAStringSet'
conjugate5(x, i = 1) <- value

Arguments

x	XNAString/XNAStringSet object
...	optional arguments to generic function to support additional methods
i	numeric - possibilities: 1 or 2. If 1 - 1st slots elements printed out, 2nd otherwise. In case the second element is not in the object, empty char created. This parameter is only available for XNAStringSet objects.
value	character vector applied only for setter method

Details

Setter methods enable overwriting single slots from XNAString and XNAStringSet objects. E.g. name<- method overwrites existing name slot

Value

vector in getter method, XNAStringSet object (with replaced name slot) in setter method

Examples

my_dic <- data.table::data.table(
  type = c(
    rep("base", 3),
    rep("sugar", 2),
    rep("backbone", 3)
  ),
  symbol = c("G", "E", "A", "F", "O", "S", "B", "X")
)
obj <- XNAString(
  name = "b",
  base = "GGE",
  sugar = "FFO",
  dictionary = my_dic
)
conjugate5(obj)

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