statsUMI4C {UMI4Cats}

R Documentation

Statistics UMI4C

Description

Creates a stats summary file and generates a summary plot describing statistics for processed UMI-4C samples.

Usage

statsUMI4C(wk_dir)

Arguments

wk_dir

Working directory where to save the outputs generated by the UMI-4c analysis.

Value

Returns a plot summarizing the main statistics of the processed UMI-4C experiments found in wk_dir. Also, writes a file named stats_summary.txt in wk_dir/logs that summarizes all the values represented in the plot.

Examples

statsUMI4C(wk_dir = system.file("extdata", "CIITA",
    package = "UMI4Cats"
))
stats <- read.delim(system.file("extdata", "CIITA", "logs", "stats_summary.txt",
    package = "UMI4Cats"
))
head(stats)

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