TreeAndLeaf-package {TreeAndLeaf}

R Documentation

TreeAndLeaf: A graph layout for binary trees with focus on dendrogram leaves.

Description

The TreeAndLeaf package combines unrooted and force-directed graph algorithms in order to layout binary trees, aiming to represent multiple layers of information onto dendrogram leaves.

Details

Package:	TreeAndLeaf
Type:	Package
Depends:	R (>= 4.0)
Imports:	RedeR, igraph, ape
Suggests:	knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics, stringr, RColorBrewer
License:	Artistic-2.0
biocViews:	NetworkEnrichment, GraphAndNetwork

Index

formatTree:	A theme function for tree-and-leaf igraph objects.
treeAndLeaf:	Layout a TreeAndLeaf diagram.

Further information is available from the vignettes vignette("TreeAndLeaf").

Author(s)

Leonardo W. Kume, Luis E. A. Rizzardi, Milena A. Cardoso, Mauro A. A. Castro

References

CASTRO, M. A. et al. RedeR: R/Bioconductor package for representing modular structures, nested networks and multiple levels of hierarchical associations. Genome Biology, 13(4):R29, 2012.

CASTRO, M. A. A. et al. Regulators of genetic risk of breast cancer identified by integrative network analysis. Nature Genetics, 48(1):12–21, 2016.

RUSU, A.; SANTIAGO, C. Grid Drawings of Binary Trees: An Experimental Study. Journal of Graph Algorithms and Applications, 12(2):131–195, 2008.

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