get_freq {SynMut}

R Documentation

Get codon usage frequency of synonymous codons

Description

Access the synonymous codon usage frequency

Usage

get_freq(object, ...)

## S4 method for signature 'regioned_dna'
get_freq(object)

## S4 method for signature 'DNAStringSet'
get_freq(object)

## S4 method for signature 'matrix'
get_freq(object)

## S4 method for signature 'vector'
get_freq(object)

Arguments

object	regioned_dna / DNAStringSet / codon usage matrix (vector)
...	...

Value

matrix

See Also

input_seq, get_region, get_cu, get_du, get_rscu

Examples

filepath <- system.file("extdata", "example.fasta", package = "SynMut")
rgd.seq <- input_seq(filepath)
get_freq(rgd.seq)

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