align_breakpoints {StructuralVariantAnnotation}

R Documentation

Adjusting the nominal position of a pair of partnered breakpoint.

Description

Adjusting the nominal position of a pair of partnered breakpoint.

Usage

align_breakpoints(
  vcf,
  align = c("centre"),
  is_higher_breakend = names(vcf) < info(vcf)$PARID
)

Arguments

vcf	A VCF object.
align	The alignment type.
is_higher_breakend	Breakpoint ID ordering.

Value

A VCF object with adjusted nominal positions.

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