S4 Class for Spatial Experiments handling

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Documentation for package ‘SpatialExperiment’ version 1.4.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

addImg	Methods for handling image-related data
addImg-method	Methods for handling image-related data
cbind-method	Combining SpatialExperiment objects
coerce-method	The SpatialImage class
colData	SpatialExperiment colData
colData<-	SpatialExperiment colData
colData<--method	SpatialExperiment colData
dim-method	The SpatialImage class
getImg	Methods for handling image-related data
getImg-method	Methods for handling image-related data
imgData	Methods for spatial attributes
imgData-method	Methods for spatial attributes
imgData-methods	Methods for handling image-related data
imgData<-	Methods for spatial attributes
imgData<--method	Methods for spatial attributes
imgRaster	The SpatialImage class
imgRaster-method	The SpatialImage class
imgRaster-method	Methods for handling image-related data
imgRaster<-	The SpatialImage class
imgRaster<--method	The SpatialImage class
imgSource	The SpatialImage class
imgSource-method	The SpatialImage class
imgSource-method	Methods for handling image-related data
imgSource<-	The SpatialImage class
imgSource<--method	The SpatialImage class
LoadedSpatialImage-class	The SpatialImage class
molecules	Methods for named assays
molecules-method	Methods for named assays
molecules<-	Methods for named assays
molecules<--method	Methods for named assays
read10xVisium	Load data from a 10x Genomics Visium experiment
readImgData	Read images & scale factors for 10x Genomics Visium
RemoteSpatialImage-class	The SpatialImage class
rmvImg	Methods for handling image-related data
rmvImg-method	Methods for handling image-related data
scaleFactors	Methods for spatial attributes
scaleFactors-method	Methods for spatial attributes
show-method	Miscellaneous SpatialExperiment methods
show-method	Miscellaneous SpatialImage methods
spatialCoords	Methods for spatial attributes
spatialCoords-method	Methods for spatial attributes
spatialCoords<-	Methods for spatial attributes
spatialCoords<--method	Methods for spatial attributes
spatialCoordsNames	Methods for spatial attributes
spatialCoordsNames-method	Methods for spatial attributes
spatialCoordsNames<-	Methods for spatial attributes
spatialCoordsNames<--method	Methods for spatial attributes
spatialData	Methods for spatial attributes
spatialData-method	Methods for spatial attributes
spatialData<-	Methods for spatial attributes
spatialData<--method	Methods for spatial attributes
spatialDataNames	Methods for spatial attributes
spatialDataNames-method	Methods for spatial attributes
spatialDataNames<-	Methods for spatial attributes
spatialDataNames<--method	Methods for spatial attributes
SpatialExperiment	The SpatialExperiment class
SpatialExperiment-assays	Methods for named assays
SpatialExperiment-class	The SpatialExperiment class
SpatialExperiment-colData	SpatialExperiment colData
SpatialExperiment-combine	Combining SpatialExperiment objects
SpatialExperiment-methods	Methods for spatial attributes
SpatialExperiment-misc	Miscellaneous SpatialExperiment methods
SpatialExperiment-subset	Subsetting SpatialExperiment objects
SpatialImage	The SpatialImage class
SpatialImage-class	The SpatialImage class
SpatialImage-misc	Miscellaneous SpatialImage methods
StoredSpatialImage-class	The SpatialImage class
[-method	Subsetting SpatialExperiment objects