ConversionRate {SingleMoleculeFootprinting}

R Documentation

Conversion rate

Description

calculate sequencing library conversion rate on a chromosome of choice

Usage

ConversionRate(sampleSheet, genome, chr = 19, clObj = NULL)

Arguments

sampleSheet	QuasR sample sheet
genome	BS genome
chr	chromosome to calculate conversion rate on (default: 19)
clObj	cluster object to emply for parallel processing created using the parallel::makeCluster function. Defaults to NULL

Value

Conversion rate

Examples

Qinput = paste0(tempdir(), "/NRF1Pair_Qinput.txt")
library(BSgenome.Mmusculus.UCSC.mm10)

if(file.exists(Qinput)){
    # DO NOT RUN
    # clObj = parallel::makeCluster(5)
    # ConversionRatePrecision = ConversionRate(sampleSheet = Qinput, genome = BSgenome.Mmusculus.UCSC.mm10, chr = 19, clObj = clObj)
    # parallel::stopCluster(clObj)
}

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