annotateEvents {SPLINTER} | R Documentation

## annotateEvents

### Description

Gives detailed description of splicing event in terms of splicing outcome post translation. Currently supports exon skipping and intron retention events.

### Usage

    annotateEvents(
      thedata,
      db,
      bsgenome,
      outputdir,
      full_output = FALSE,
      output_prefix = "results"
    )

### Arguments

`thedata` | list. output of extractSpliceEvents.
`db` | TxDb object
`bsgenome` | BSGenome object
`outputdir` | character. relative output directory to current location.
`full_output` | logical. writes out detailed text report and generate figures.
`output_prefix` | character. text prefix for full_output files.

### Value

list containing information on (1) data.frame with splicing regions (2) splice event type

### Author(s)

Diana LOW

[Package SPLINTER version 1.20.0 Index]