findCompatibleExon {SPLINTER} | R Documentation

## findCompatibleExon

### Description

Finds compatible exon in annotation with the one present in roi object

### Usage

    findCompatibleExon(tx, roi, verbose = FALSE)

### Arguments

`tx` | GRangesList object of transcripts
`roi` | `makeROI` object contaning event information
`verbose` | logical. printouts and messages.

### Value

list of length 3
(1) GRangesList hits
(2) Number of transcripts
(3) Original number of input transcripts

### Author(s)

Diana Low

### Examples

    compatible_exons <- findCompatibleExon(valid_cds,roi)

[Package SPLINTER version 1.20.0 Index]