DICE {SMAD} | R Documentation

## DICE

### Description

DICE The Dice coefficient is used to score the interaction affinity between two proteins.

### Usage

    DICE(datInput)

### Arguments

`datInput` | A dataframe with column names: idRun, idPrey. Each row represent one unique protein captured in one pull-down experiment.

### Value

A dataframe consists of pairwise combindation of preys identified in the input with DICE scores.

### Author(s)

Qingzhou Zhang, zqzneptune@hotmail.com

### References

Bing Zhang et al., From pull-down data to protein interaction networks and complexes with biological relevance, Bioinformatics, Volume 24, Issue 7, 1 April 2008, Pages 979–986, https://doi.org/10.1093/bioinformatics/btn036

### Examples

    data(TestDatInput)
    datScore <- DICE(TestDatInput)
    head(datScore)

[Package SMAD version 1.10.0 Index]